Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14f21
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    27   2.0  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    26   2.7  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    26   2.7  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    25   4.7  
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    25   4.7  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   4.7  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   6.2  
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    25   8.2  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    25   8.2  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    25   8.2  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    25   8.2  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    25   8.2  
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    25   8.2  

>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 15/68 (22%), Positives = 34/68 (50%)
 Frame = +1

Query: 190 FLHSILAVFESVFHDELSQADAPDQHIARPIDLRNVKIEQYPVSF*HLVQHGHGVVIDKI 369
           F+ + +A + +     L + +APD+   + +++  + +E   V+   +    HG++I KI
Sbjct: 253 FISTAVADYTNKILSLLKKEEAPDELTQKLLEVLGLLLEYQQVNILKIWPELHGLLISKI 312

Query: 370 PLVPQEIA 393
              P  I+
Sbjct: 313 SYDPNLIS 320


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = -1

Query: 441 VFVKMYEKIYKMSLLYGYFLRNQWNLVDDNTVAMLNQMSKTDRILFNFD 295
           V +K+++ ++   L Y Y +   + + + +   +LNQ S  D +L  F+
Sbjct: 621 VLLKLWDVLFTNYLSYDYHIFVAYAIAERHREVLLNQTSAFDEVLKYFN 669


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 267 MLIWCIGLRKFIVKDGLKDSEYGMKK 190
           M+I C+G    IV D ++ S + MKK
Sbjct: 120 MIIECVGWNGMIVSDKMRKSVFHMKK 145


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = -1

Query: 486 CQRVMKKTHAKSIKYVFVKMYEK---IYKMSLLYGYFLRN-QWNLVD 358
           C   + K  +K I    ++ ++K   ++   LLYGY+ RN + N +D
Sbjct: 94  CPHQVGKPISKGINSGRIQFFDKHLSMFPQDLLYGYYTRNRESNTID 140


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 127 RKYDSKEQRIKTNVSYLQPSLFLHSILAVFES 222
           R Y  K+ +I+  ++YL P LF+H ++   ES
Sbjct: 103 RVYKKKKGKIE-ELNYLPPVLFIHGLMMNSES 133


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 264 LIWCIGLRKFIVKDGLKDSEYGMKKQRWLKIAHIS 160
           LI  +G+R+    D   D+++  K Q+ LK  H+S
Sbjct: 259 LIRLLGIRRVFENDPEIDAQFTTKSQQLLKSYHLS 293


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -1

Query: 459 AKSIKYVFVKMYEKIYKMSLLYGYFLRNQWNLVDDNTVAMLNQMSKTDRIL-FNFDISKI 283
           +K +  +   +   IY+  ++Y  + +N+W +  D    + N  S+ D  +     ISK+
Sbjct: 648 SKGVPLLVRNVLLSIYENKIIYFDWKKNRWEVNYDEMYTLDNDYSEPDAFMTAKKKISKL 707

Query: 282 -DWPRYMLIW 256
            D  R +L W
Sbjct: 708 NDSSRAILGW 717


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 122 NKENTTPKNSV*KLM*AIFSHLCFFI 199
           NK+N TP N++ +   A  SH  F+I
Sbjct: 76  NKKNVTPNNNIRQKNTATSSHPSFYI 101


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 415 IQNVFVVRLFPEEPVESCR*QHRGH 341
           I   ++V+ FP EPV+     H GH
Sbjct: 25  IHEQYLVKAFPNEPVDYEGRMHAGH 49


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 296 SKLNNILSVFDIWFSMATVLSSTRFHWFLRK*PYNKDILYIF 421
           SK++N LSV    +S + V      ++  R+    KD+L++F
Sbjct: 127 SKIHNQLSVCHDEYSTSIVSPEVAMNYLQRRQSGMKDLLFVF 168


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 402 LLYGYFLRNQWNLVDDNTVAMLNQ 331
           + Y Y+ +NQW L+DD T+  + +
Sbjct: 397 IAYTYY-QNQWFLLDDTTIVEVKE 419


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 8/53 (15%), Positives = 28/53 (52%)
 Frame = +2

Query: 290 EMSKLNNILSVFDIWFSMATVLSSTRFHWFLRK*PYNKDILYIFSYILTNTYF 448
           + +++ N ++   +W  +  +   T  ++     P+N++ L++ ++ + N Y+
Sbjct: 335 DQARIMNAITFVMMWDGIPIIYYGTEQNFNSYHDPFNREALWLSNFDMENVYY 387


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -1

Query: 216 KDSE-YGMKKQRWLKIAHISFYTLFFG 139
           KD E YG    +W K  H + +  FFG
Sbjct: 175 KDEEPYGKLNPKWTKWFHRNLFPCFFG 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,180,680
Number of Sequences: 5004
Number of extensions: 46906
Number of successful extensions: 166
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)