Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14f21
         (492 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1566 + 27909297-27909390,27909542-27909645,27912899-279130...    30   1.2  
02_01_0331 + 2331774-2331985,2332825-2332952,2333392-2333452,233...    30   1.2  
09_01_0039 - 687711-688607,692336-693113,693414-693501,693761-69...    28   3.5  
03_05_0793 + 27755704-27756386,27756473-27757274,27757379-277576...    28   3.5  
02_04_0291 + 21637700-21638164                                         27   6.2  
09_01_0132 + 1995438-1996178                                           27   8.2  
02_02_0052 - 6389387-6389491,6389492-6389586,6390077-6390221           27   8.2  

>08_02_1566 +
           27909297-27909390,27909542-27909645,27912899-27913098,
           27913214-27913314,27913427-27914130,27914671-27914834,
           27914941-27915100
          Length = 508

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = -1

Query: 432 KMYEKIYKMSLLYGYFLRNQWNLVDDNTVAMLNQMSKT----DRILFNFDISKIDWPRYM 265
           + Y  +  +  +YG F   +    D N   +  +M K+    D  +FNFD   IDW  Y 
Sbjct: 435 RQYRYVMHLVDVYGPFAFFKGCFDDINLERLRQRMGKSRNPQDDEMFNFDPKTIDWEDYF 494

Query: 264 L-IWCIGLRKFIVK 226
             I   G+ K+I+K
Sbjct: 495 YRIHIPGVLKYILK 508


>02_01_0331 +
           2331774-2331985,2332825-2332952,2333392-2333452,
           2333878-2334035,2335001-2335083,2336364-2336468,
           2336659-2336756,2337136-2337256,2337366-2337416,
           2337987-2338179,2338277-2338845,2338964-2339017,
           2339250-2339412,2340155-2340417,2340530-2340717,
           2341875-2341945,2342021-2342309,2343962-2344027,
           2344186-2344303,2344468-2344575,2344656-2344805,
           2344892-2345065,2345161-2345232
          Length = 1164

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = +2

Query: 281 SIFEMSKLNNILSVFDIWFSM-----ATVLSSTRFHW 376
           SIF   K+ + + ++D WF++     +   SST +HW
Sbjct: 316 SIFSSKKIRSPIDLYDFWFNLNYKGSSQTASSTAYHW 352


>09_01_0039 -
           687711-688607,692336-693113,693414-693501,693761-694148,
           694176-694401,694527-694680,695073-695145
          Length = 867

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 232 RERRTQRQRVWNEETEMAEDSSH*FLYAVLW 140
           R   T R+R WN+  E+     H     +LW
Sbjct: 767 RSSSTARERAWNDRLELVPKEEHAAFLMILW 797


>03_05_0793 +
           27755704-27756386,27756473-27757274,27757379-27757634,
           27758355-27758566,27760494-27760709
          Length = 722

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
 Frame = -1

Query: 276 PRYMLIWCIGLRKFIVKDGLKDSEYG---MKKQRWLKIAHISFYTLFFGVVFSLLYLACR 106
           P Y L    GL  +++K G+    YG    K +   K +H++F     G   S   +   
Sbjct: 497 PEYDLHVICGLNPYVIKSGVSPLHYGDSSCKIRYKSKYSHVNFLASPRGSHSSDTVIPTL 556

Query: 105 IFMYLCNLNTIAAQTL 58
            F   CN N I  + L
Sbjct: 557 FFAECCNDNDITDEPL 572


>02_04_0291 + 21637700-21638164
          Length = 154

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 289 EDRLAALYADLVHRLEKVHRERRTQ-RQRVWNEETEMAEDSS 167
           +D   AL    + R  + HR RR Q RQR W +      DS+
Sbjct: 53  DDAARALTLLALRRRRRAHRRRRRQARQRRWRQARATTADST 94


>09_01_0132 + 1995438-1996178
          Length = 246

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 399 LYGYFLRNQWNLVDDNTVAMLNQMSKTDRILFNFDISKID 280
           L G+ L+     +DD T   +N M+K  R+L    + K+D
Sbjct: 192 LGGHVLKMGLEFIDDGTAVRMNGMAKKQRVLELKTMLKLD 231


>02_02_0052 - 6389387-6389491,6389492-6389586,6390077-6390221
          Length = 114

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 199 SILAVFESVFHDELSQADAPDQHIARPIDLRNVKIEQYPVS 321
           SIL          LS    P+ H+ RP DL+N  + Q  +S
Sbjct: 64  SILGAVNQPAVPGLSLQVRPEDHVRRPRDLKNNSVNQINIS 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,685,330
Number of Sequences: 37544
Number of extensions: 250632
Number of successful extensions: 645
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)