Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14f21
(492 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098505-1|AAC67415.1| 536|Caenorhabditis elegans Hypothetical ... 56 2e-08
U41009-10|AAA82284.2| 313|Caenorhabditis elegans Serpentine rec... 31 0.34
Z99710-6|CAB16869.1| 362|Caenorhabditis elegans Hypothetical pr... 31 0.45
AF040652-5|AAB95022.2| 378|Caenorhabditis elegans Hypothetical ... 31 0.60
Z75714-11|CAB00063.2| 723|Caenorhabditis elegans Hypothetical p... 29 1.8
Z75714-10|CAN99711.1| 721|Caenorhabditis elegans Hypothetical p... 29 1.8
Z92777-4|CAB07170.1| 304|Caenorhabditis elegans Hypothetical pr... 29 2.4
U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe... 28 3.2
U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe... 28 3.2
AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty... 28 3.2
AF016684-16|AAB66213.1| 506|Caenorhabditis elegans Hypothetical... 28 4.2
Z92773-1|CAB07131.1| 395|Caenorhabditis elegans Hypothetical pr... 27 5.6
Z81540-3|CAB04404.1| 281|Caenorhabditis elegans Hypothetical pr... 27 5.6
U53154-6|AAC25855.3| 357|Caenorhabditis elegans Nuclear hormone... 27 5.6
U21320-3|AAA62532.1| 436|Caenorhabditis elegans Hypothetical pr... 27 5.6
AY204192-1|AAO39196.1| 357|Caenorhabditis elegans nuclear recep... 27 5.6
AY204191-1|AAO39195.1| 357|Caenorhabditis elegans nuclear recep... 27 5.6
>AF098505-1|AAC67415.1| 536|Caenorhabditis elegans Hypothetical
protein Y71H10A.2 protein.
Length = 536
Score = 55.6 bits (128), Expect = 2e-08
Identities = 21/75 (28%), Positives = 43/75 (57%)
Frame = -1
Query: 435 VKMYEKIYKMSLLYGYFLRNQWNLVDDNTVAMLNQMSKTDRILFNFDISKIDWPRYMLIW 256
VK+Y K++KM +F W+ +M+ D+ +NFD+ ++DW Y+ +
Sbjct: 379 VKLYSKVWKMIETLHFFTTRGWSFNARGLPEFFEKMTPADQKEYNFDVRQVDWNSYLFDY 438
Query: 255 CIGLRKFIVKDGLKD 211
+G++KF++K+ L++
Sbjct: 439 VMGIKKFLLKENLEN 453
>U41009-10|AAA82284.2| 313|Caenorhabditis elegans Serpentine
receptor, class v protein17 protein.
Length = 313
Score = 31.5 bits (68), Expect = 0.34
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 4/148 (2%)
Frame = -1
Query: 450 IKYVF---VKMYEKIYKMSLLYGYFLRNQWNLVDDNTVAMLNQMSKTDRILFNFDISKID 280
I Y++ V ++ I+ SL G+ + LV D + +SKT +I F F ++
Sbjct: 131 IAYIYWGPVAIFNSIFLSSLEIGFDSPERMILVMDPDI-----ISKTTKITFFFVVASC- 184
Query: 279 WPRYMLIWCIGLRKFIVKD-GLKDSEYGMKKQRWLKIAHISFYTLFFGVVFSLLYLACRI 103
+ C+ L IVK ++ QR +++A + F + L+YL+
Sbjct: 185 ------VTCLTLYGLIVKFIRMRSQTVSKSLQREIRLA-LQVSLSFAAELILLIYLSFSY 237
Query: 102 FMYLCNLNTIAAQTLKI*PIAFGFVGFI 19
+ + + A T K P+A+G + FI
Sbjct: 238 YSAEIEDSDLIANTRKYFPLAYGILSFI 265
>Z99710-6|CAB16869.1| 362|Caenorhabditis elegans Hypothetical
protein F08A8.6 protein.
Length = 362
Score = 31.1 bits (67), Expect = 0.45
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +1
Query: 286 LRNVKIEQYPVSF*HLVQHGHGVVIDKIPLVPQEIAVQQRHFVYLFIHFNEYIFYRFCV 462
++ +K+E +PV H ++ D P+VP+E ++ F L +H+ + Y C+
Sbjct: 50 VKKIKLENHPVLTWKFCLLVHKLLRDGHPVVPKEAYRNEKRFTQLALHWKDKRDYGPCI 108
>AF040652-5|AAB95022.2| 378|Caenorhabditis elegans Hypothetical
protein T05A8.5 protein.
Length = 378
Score = 30.7 bits (66), Expect = 0.60
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = -3
Query: 349 RGHAEPNVKN*QDIVQF*HFEDRLAALYADLVHRLEKVHRERRTQRQRVWNEETEMAEDS 170
RGH E NV + IVQ + LA++ AD RL K+ + + + +WNE+ + D+
Sbjct: 267 RGH-EGNVTS-LSIVQMDQTKRLLASVSADRQIRLWKIEEDGQAVLKPIWNEDVPLEADN 324
>Z75714-11|CAB00063.2| 723|Caenorhabditis elegans Hypothetical
protein ZC434.6b protein.
Length = 723
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 17 HIKPTNPNAIGYILSV*AAIVFKLHK-YIKILQARYNKENTTPKNSV*KLM*AIFSH 184
HI P PN + YIL V V K K Y+ + RY + T + ++ + SH
Sbjct: 371 HIHPIRPNELDYILEVQQIGVAKGRKYYVHVDGERYQQNKTQTDRVIDRIERGLRSH 427
>Z75714-10|CAN99711.1| 721|Caenorhabditis elegans Hypothetical
protein ZC434.6a protein.
Length = 721
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 17 HIKPTNPNAIGYILSV*AAIVFKLHK-YIKILQARYNKENTTPKNSV*KLM*AIFSH 184
HI P PN + YIL V V K K Y+ + RY + T + ++ + SH
Sbjct: 371 HIHPIRPNELDYILEVQQIGVAKGRKYYVHVDGERYQQNKTQTDRVIDRIERGLRSH 427
>Z92777-4|CAB07170.1| 304|Caenorhabditis elegans Hypothetical
protein C17H1.6 protein.
Length = 304
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = -1
Query: 453 SIKYVFVKMYEKIYKMSLLYGYFLRNQWNLVDDNTVAMLNQMSKTDRILFNFDISKID 280
++K V+ EK + +G + W V++N +LN+M +T+ I +K+D
Sbjct: 62 ALKEKNVRFQEKCHNERKQFGLKI---WKTVEENNADVLNEMQRTNEIKLGNQQNKVD 116
>U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying
defective protein 19,isoform a protein.
Length = 1783
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Frame = -1
Query: 471 KKTHAKSIKYVFVKMYE-----KIYKMSLLY--GYFLRNQWNLVD 358
K T ++I+YVF+ ++ KI M ++ +LRN WN++D
Sbjct: 119 KNTLLETIEYVFIVVFTIECVLKIVAMGFMFHPSAYLRNAWNILD 163
>U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying
defective protein 19,isoform b protein.
Length = 1877
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Frame = -1
Query: 471 KKTHAKSIKYVFVKMYE-----KIYKMSLLY--GYFLRNQWNLVD 358
K T ++I+YVF+ ++ KI M ++ +LRN WN++D
Sbjct: 119 KNTLLETIEYVFIVVFTIECVLKIVAMGFMFHPSAYLRNAWNILD 163
>AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type
calcium channelalpha 1 subunit protein.
Length = 1783
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Frame = -1
Query: 471 KKTHAKSIKYVFVKMYE-----KIYKMSLLY--GYFLRNQWNLVD 358
K T ++I+YVF+ ++ KI M ++ +LRN WN++D
Sbjct: 119 KNTLLETIEYVFIVVFTIECVLKIVAMGFMFHPSAYLRNAWNILD 163
>AF016684-16|AAB66213.1| 506|Caenorhabditis elegans Hypothetical
protein F45C12.16 protein.
Length = 506
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/75 (25%), Positives = 33/75 (44%)
Frame = +1
Query: 163 NVSYLQPSLFLHSILAVFESVFHDELSQADAPDQHIARPIDLRNVKIEQYPVSF*HLVQH 342
NV YL S+ +H+ + S A D+ + + +N+K PV + +H
Sbjct: 387 NVQYLFGSVSIHNTNLKNIDFLANLRSMAVLNDEPAIKIVSNQNLKYAYLPVLSTIITKH 446
Query: 343 GHGVVIDKIPLVPQE 387
VV+ PL+P +
Sbjct: 447 QRTVVVHNNPLLPSD 461
>Z92773-1|CAB07131.1| 395|Caenorhabditis elegans Hypothetical
protein W08E3.3 protein.
Length = 395
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = -3
Query: 286 DRLAALYADLVHRLEKVHRERRTQRQRVWNEETEMAEDSSH*FLYA 149
D+ + D + R++K E++ RQ +WNE+ E+ + H FL A
Sbjct: 175 DKTKKIEYDTLVRVKKCLEEKKPVRQELWNEK-EIEILNKHLFLTA 219
>Z81540-3|CAB04404.1| 281|Caenorhabditis elegans Hypothetical
protein F46B3.3 protein.
Length = 281
Score = 27.5 bits (58), Expect = 5.6
Identities = 21/80 (26%), Positives = 35/80 (43%)
Frame = +1
Query: 31 KPKCNWLYFKCLSGDRIQIT*VHKNSTGEI*QRKYDSKEQRIKTNVSYLQPSLFLHSILA 210
KP NWL KC + ++ I + G I +R +D E + T + L L ++
Sbjct: 89 KPSFNWLRVKCGNSVKVYIP-AEYIADGHIPKRTFDLHETEVSTAYTV---KLGLEQVII 144
Query: 211 VFESVFHDELSQADAPDQHI 270
F + +L+ AD H+
Sbjct: 145 CF-MILLIKLATADTGAAHV 163
>U53154-6|AAC25855.3| 357|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 107 protein.
Length = 357
Score = 27.5 bits (58), Expect = 5.6
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 429 MYEKIYKMSLLYGYFLRNQWNLVDDNTVAMLNQMSKTD-RILFNFDISK 286
M +Y++SL + W L +D T NQ+ K D RILFN SK
Sbjct: 139 MQVNLYELSLEVKTDSKLMWKLCED-TFPEFNQLCKMDKRILFNNFYSK 186
>U21320-3|AAA62532.1| 436|Caenorhabditis elegans Hypothetical
protein K04G7.4a protein.
Length = 436
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 292 NVKIEQYPVSF*HLVQHGHGVVIDKIPLVPQEIAVQQRHFVYL-FIHFNEYIFYR 453
N + +QY + H++ G GVV+++ P A R Y+ +F Y F R
Sbjct: 155 NCRFDQYLNALAHILNTGQGVVLERTPHSDFVFANAMRDKNYIGHEYFKHYYFVR 209
>AY204192-1|AAO39196.1| 357|Caenorhabditis elegans nuclear receptor
NHR-107 protein.
Length = 357
Score = 27.5 bits (58), Expect = 5.6
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 429 MYEKIYKMSLLYGYFLRNQWNLVDDNTVAMLNQMSKTD-RILFNFDISK 286
M +Y++SL + W L +D T NQ+ K D RILFN SK
Sbjct: 139 MQVNLYELSLEVKTDSKLMWKLCED-TFPEFNQLCKMDKRILFNNFYSK 186
>AY204191-1|AAO39195.1| 357|Caenorhabditis elegans nuclear receptor
NHR-107 protein.
Length = 357
Score = 27.5 bits (58), Expect = 5.6
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 429 MYEKIYKMSLLYGYFLRNQWNLVDDNTVAMLNQMSKTD-RILFNFDISK 286
M +Y++SL + W L +D T NQ+ K D RILFN SK
Sbjct: 139 MQVNLYELSLEVKTDSKLMWKLCED-TFPEFNQLCKMDKRILFNNFYSK 186
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,891,113
Number of Sequences: 27780
Number of extensions: 256983
Number of successful extensions: 811
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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