Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14f18
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharo... 133 2e-32
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 29 0.58
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 27 1.8
SPAC4F8.05c |mrpl28||mitochondrial ribosomal protein subunit L28... 27 2.3
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi... 26 4.1
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 26 4.1
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac... 26 4.1
SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma... 26 5.4
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 26 5.4
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 25 9.4
>SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 133 bits (321), Expect = 2e-32
Identities = 71/165 (43%), Positives = 99/165 (60%), Gaps = 3/165 (1%)
Frame = -2
Query: 639 ILEPNAMCLXTVS-QEGFPSARFVLCKGYGKEGFKFYTNYG-SKKAKDIEGNPNVAATFY 466
I P + L T G S+R VL K GF +TN G SKKAKD++ NP + +F+
Sbjct: 53 IKSPESTTLSTARLPSGRVSSRLVLLKELDHRGFIIFTNLGTSKKAKDLKSNPYASLSFW 112
Query: 465 WEILNRSVRIEGRVEKLSEDDSTKYFHTRPVVSQIAACASYQSTPIESRDVLCEREKLLE 286
WE L R VR+EG +E+LS +++ +YF TRP S+I A AS QS I R+ L +R + +
Sbjct: 113 WEPLQRQVRVEGIIERLSREETEEYFKTRPRNSRIGAWASPQSEVIADREELEKRVEEYK 172
Query: 285 QQY-MIPGKEVPKPSYWGGYLLIPRSVEFWQGQRDRLHDRIKFRR 154
+++ VP P +WGG ++P +EFWQG + RLHDR FRR
Sbjct: 173 KKFGEDESVPVPVPDFWGGIRIVPLEIEFWQGGKYRLHDRFSFRR 217
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 29.1 bits (62), Expect = 0.58
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 171 DHEAGPSDLARIRQTLELRDILPSSLVSELLYQVSYIAVQE 293
D +A PS ARI + EL D L +SEL+ V+ ++E
Sbjct: 37 DEDADPSRTARIDRIAELLDGLNDEQISELVNGVNSTTIKE 77
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 154 SSEFDAIMKPVPLTLPEFDRPWN*EISSPVAWFRNFFTR 270
SS+ + V LPEF P + +I ++W FF+R
Sbjct: 50 SSDGSVQIDTVRAVLPEFQFPSHPQIGDCLSWIETFFSR 88
>SPAC4F8.05c |mrpl28||mitochondrial ribosomal protein subunit
L28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 118
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = -2
Query: 525 YGSKKAKDIEGNPNVAATFYWEILNRSVRI-EGRVEKLSED 406
YG+KK + ++ NP++ E++NR+ RI E R EK E+
Sbjct: 28 YGNKKVRSLKMNPDMWEKH--EVINRAWRIHEYRQEKQREN 66
>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 276 MIPGKEVPKPSYWGGYLLIPRSVE 205
MIPG+E P +Y G +L P ++E
Sbjct: 43 MIPGEERPNVNYGGKVILPPSALE 66
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 274 HILLFKKLFSFTQNISGLYW 333
H+L FK LF F+ N+ W
Sbjct: 171 HLLFFKSLFKFSTNLVKFQW 190
>SPAC1610.04 |mug99||meiotically upregulated gene
Mug99|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 619 VSXYSFTGRFSISSVCFVQGLW*RRIQILHKLWK 518
VS +S FS+ SVC V GL+ +Q ++ WK
Sbjct: 418 VSHFSLYNAFSVFSVCGVFGLY--YLQSSYRSWK 449
>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 318
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 20 NTSVILVFKICPTYGFRIYGE 82
NT +++ KICP+ G I+GE
Sbjct: 11 NTDLVMRTKICPSGGETIHGE 31
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = +2
Query: 23 TSVILVFKI----CPTYGFRIYGESRSKTHPSSPSC 118
TS +L+F + PT FRIYG R P +C
Sbjct: 539 TSTMLLFAVLGAFAPTMLFRIYGPFRLDCEPCGANC 574
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 25.0 bits (52), Expect = 9.4
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Frame = -2
Query: 591 FPSARFVLCKGYGKEGFKFYTNYGSKKAKDIEGNPNVAATF---YWEILNRSVRIEGRVE 421
F + +LC KE F+ + + K +E P+V A Y +L ++ G +
Sbjct: 264 FVEGQSLLCSVISKEDRIFHLSLTATSTKALEVMPSVQAILPGDYINVLVTDIKESGVIA 323
Query: 420 KLS--EDDSTKYFHTRPV 373
K D ++ +H+ PV
Sbjct: 324 KYMGVVDVTSDIYHSSPV 341
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,461
Number of Sequences: 5004
Number of extensions: 62297
Number of successful extensions: 184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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