Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14f18
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0182 - 11552540-11552606,11552692-11552787,11553458-115535... 194 5e-50
03_05_0833 - 28045442-28045881,28045961-28046063,28046172-280462... 32 0.45
11_06_0256 - 21727919-21728366,21728463-21728512 31 1.0
08_01_0213 - 1703682-1703696,1703824-1703919,1704033-1704104,170... 30 1.8
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111... 28 5.6
03_05_0832 - 28037047-28037315,28037428-28037530,28037664-280376... 28 7.4
08_02_1477 - 27375872-27376723,27376825-27377091 27 9.7
06_03_1505 + 30635572-30635802,30636977-30637135,30637217-306373... 27 9.7
03_05_0578 + 25798536-25799384 27 9.7
>10_06_0182 -
11552540-11552606,11552692-11552787,11553458-11553528,
11553660-11553764,11554149-11554239,11554331-11554381,
11554478-11554566,11554667-11554909,11555027-11555190,
11555883-11555988,11556075-11556242,11557456-11557494,
11557582-11557713
Length = 473
Score = 194 bits (473), Expect = 5e-50
Identities = 89/158 (56%), Positives = 112/158 (70%)
Frame = -2
Query: 633 EPNAMCLXTVSQEGFPSARFVLCKGYGKEGFKFYTNYGSKKAKDIEGNPNVAATFYWEIL 454
EPNAM L T +EG PS+R VL KG K+GF +YTNYGS+KA D+ NPN A FYW +
Sbjct: 299 EPNAMALTTADKEGKPSSRMVLLKGVDKQGFVWYTNYGSQKAHDLSENPNAALLFYWNEM 358
Query: 453 NRSVRIEGRVEKLSEDDSTKYFHTRPVVSQIAACASYQSTPIESRDVLCEREKLLEQQYM 274
NR VR+EG V+K+ E++S KYFH+RP SQ+ A S QST I R+VL + K LEQ+Y
Sbjct: 359 NRQVRVEGSVQKVPEEESEKYFHSRPRGSQLGAIVSKQSTIIPGREVLQQAYKELEQKYS 418
Query: 273 IPGKEVPKPSYWGGYLLIPRSVEFWQGQRDRLHDRIKF 160
G +PKP YWGGY L P+ EFWQGQ+ RLHDR+++
Sbjct: 419 -DGSVIPKPDYWGGYRLTPKLFEFWQGQQSRLHDRLQY 455
>03_05_0833 -
28045442-28045881,28045961-28046063,28046172-28046203,
28046299-28046516,28046606-28046721,28047757-28048000,
28048423-28048510,28048596-28048667,28048758-28048869,
28049047-28049115,28049627-28049685,28050067-28050325
Length = 603
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 549 EGFKFYTNYGSKKAKDIEGNPNVAATFYWEILNRSVRIEGRVEK 418
E +FY NY ++ K I+ NV A F W +L+ + G K
Sbjct: 475 ERIEFYKNYLTELKKAIDDGANVVAYFAWSLLDNFEWLSGYTSK 518
>11_06_0256 - 21727919-21728366,21728463-21728512
Length = 165
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 502 IFSLFTSIVCVKFESFFTITLAQNKPS*WKTFL 600
I+S+ + +V K E ++ I L NKP WK+ L
Sbjct: 7 IYSIGSQVVSRKAEKYYLIFLTLNKPKKWKSLL 39
>08_01_0213 -
1703682-1703696,1703824-1703919,1704033-1704104,
1704372-1704444,1704508-1704710,1705058-1706330,
1706800-1706868,1706940-1707088,1707275-1707487,
1708385-1708669
Length = 815
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -2
Query: 519 SKKAKDIEGNPNVAATFYWEILNRSVRIEGRVEKLS 412
+K+A+ IE +PN A +W +N RIE ++ ++
Sbjct: 91 AKQAQVIEKDPNKAVPLFWAAINSGDRIESALKDMA 126
>03_01_0141 +
1116833-1117082,1117658-1118574,1119417-1119579,
1119668-1120497,1120562-1120570
Length = 722
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 640 NSGAQCNVSXYSFTGRFSISSVC 572
+SG CNV S TGRFS +C
Sbjct: 282 SSGETCNVGENSITGRFSQEILC 304
>03_05_0832 -
28037047-28037315,28037428-28037530,28037664-28037695,
28037788-28038005,28038145-28038260,28038514-28038757,
28039129-28039216,28039513-28039588,28040126-28040164,
28040347-28040405,28041292-28041529
Length = 493
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 537 FYTNYGSKKAKDIEGNPNVAATFYWEILNRSVRIEGRVEK 418
FY +Y ++ K I+ NVA F W +L+ + G K
Sbjct: 426 FYRSYLTQLKKAIDEGANVAGYFAWSLLDNFEWLSGYTSK 465
>08_02_1477 - 27375872-27376723,27376825-27377091
Length = 372
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -2
Query: 537 FYTNYGSKKAK-DIEGNPNVAATFYWEILNRSVRIEGRVEKLSEDDSTKYFHTRPVVSQI 361
F + G K+ + D G+ + AAT E ++ R G+ E+ +E + + RPV I
Sbjct: 294 FGVSIGRKRMRHDGGGDDDHAATVKAEPMDG--RPHGKDEQSAETQAWPIYRPRPVYQPI 351
Query: 360 AACASYQ 340
AC Y+
Sbjct: 352 RACNGYE 358
>06_03_1505 +
30635572-30635802,30636977-30637135,30637217-30637328,
30638004-30638123,30638264-30638415,30638938-30638972,
30639077-30639233,30639328-30639381,30639502-30639594,
30639685-30639827,30639939-30640009,30640323-30640453
Length = 485
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -2
Query: 354 CASYQSTPIESRDVLCEREKLLE 286
CASY S +R+ LCE+EKLL+
Sbjct: 237 CASYWSA-WSAREALCEQEKLLK 258
>03_05_0578 + 25798536-25799384
Length = 282
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 441 RIEGRVEKLSEDDSTKYFHTRPVVSQ 364
RIEG+ +S DD ++ +TR ++SQ
Sbjct: 254 RIEGKGYAISHDDIYEFLYTRKILSQ 279
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,483,062
Number of Sequences: 37544
Number of extensions: 361884
Number of successful extensions: 835
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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