Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14f18
(649 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY119015-1|AAM50875.1| 246|Drosophila melanogaster LP04163p pro... 218 5e-57
AE014297-654|AAN13381.1| 237|Drosophila melanogaster CG31472-PB... 218 5e-57
AE014297-653|AAF54151.3| 246|Drosophila melanogaster CG31472-PA... 218 5e-57
BT011395-1|AAR96187.1| 251|Drosophila melanogaster AT25767p pro... 83 2e-16
AE014297-655|AAN13382.1| 257|Drosophila melanogaster CG31473-PA... 83 2e-16
BT024359-1|ABC86421.1| 213|Drosophila melanogaster IP08110p pro... 40 0.002
AE014298-1162|AAF46359.1| 213|Drosophila melanogaster CG15343-P... 40 0.002
AY060784-1|AAL28332.1| 347|Drosophila melanogaster GH25366p pro... 31 1.8
AF133269-1|AAD33042.1| 347|Drosophila melanogaster geranylgeran... 31 1.8
AE014134-506|AAF51183.1| 347|Drosophila melanogaster CG18627-PA... 31 1.8
>AY119015-1|AAM50875.1| 246|Drosophila melanogaster LP04163p
protein.
Length = 246
Score = 218 bits (533), Expect = 5e-57
Identities = 112/190 (58%), Positives = 134/190 (70%), Gaps = 1/190 (0%)
Frame = -2
Query: 642 EILEPNAMCLXTVSQEGFPSARFVLCKGYGKEGFKFYTNYGSKKAKDIEGNPNVAATFYW 463
EILEPNA L TVS EG PS R+VL K EGF F+TNYGS+KA+DI+ NP VA +FYW
Sbjct: 59 EILEPNAAALATVSAEGRPSNRYVLVKEATAEGFTFFTNYGSRKAEDIKSNPYVAISFYW 118
Query: 462 EILNRSVRIEGRVEKLSEDDSTKYFHTRPVVSQIAACASYQSTPIESRDVLCEREKLLEQ 283
L RSVRIEG EK+S +DS KYFH RP SQI A AS QS I SR L + E ++
Sbjct: 119 LPLRRSVRIEGVAEKISVEDSLKYFHQRPRASQIGAAASPQSQRIPSRSYLDDVEAAIKL 178
Query: 282 QYMIPGKEVPKPSYWGGYLLIPRSVEFWQGQRDRLHDRIKFRRPNKGEVS-DERLLHEGE 106
+ + P EVP P+ WGGYL+ P +EFWQGQ DRLHDRI+FRR E D +L+H+GE
Sbjct: 179 E-LGPDGEVPLPN-WGGYLVRPDLIEFWQGQTDRLHDRIRFRRGGGVESEVDSKLVHKGE 236
Query: 105 DGWVFERLSP 76
DGWV+ERL+P
Sbjct: 237 DGWVYERLAP 246
>AE014297-654|AAN13381.1| 237|Drosophila melanogaster CG31472-PB,
isoform B protein.
Length = 237
Score = 218 bits (533), Expect = 5e-57
Identities = 112/190 (58%), Positives = 134/190 (70%), Gaps = 1/190 (0%)
Frame = -2
Query: 642 EILEPNAMCLXTVSQEGFPSARFVLCKGYGKEGFKFYTNYGSKKAKDIEGNPNVAATFYW 463
EILEPNA L TVS EG PS R+VL K EGF F+TNYGS+KA+DI+ NP VA +FYW
Sbjct: 50 EILEPNAAALATVSAEGRPSNRYVLVKEATAEGFTFFTNYGSRKAEDIKSNPYVAISFYW 109
Query: 462 EILNRSVRIEGRVEKLSEDDSTKYFHTRPVVSQIAACASYQSTPIESRDVLCEREKLLEQ 283
L RSVRIEG EK+S +DS KYFH RP SQI A AS QS I SR L + E ++
Sbjct: 110 LPLRRSVRIEGVAEKISVEDSLKYFHQRPRASQIGAAASPQSQRIPSRSYLDDVEAAIKL 169
Query: 282 QYMIPGKEVPKPSYWGGYLLIPRSVEFWQGQRDRLHDRIKFRRPNKGEVS-DERLLHEGE 106
+ + P EVP P+ WGGYL+ P +EFWQGQ DRLHDRI+FRR E D +L+H+GE
Sbjct: 170 E-LGPDGEVPLPN-WGGYLVRPDLIEFWQGQTDRLHDRIRFRRGGGVESEVDSKLVHKGE 227
Query: 105 DGWVFERLSP 76
DGWV+ERL+P
Sbjct: 228 DGWVYERLAP 237
>AE014297-653|AAF54151.3| 246|Drosophila melanogaster CG31472-PA,
isoform A protein.
Length = 246
Score = 218 bits (533), Expect = 5e-57
Identities = 112/190 (58%), Positives = 134/190 (70%), Gaps = 1/190 (0%)
Frame = -2
Query: 642 EILEPNAMCLXTVSQEGFPSARFVLCKGYGKEGFKFYTNYGSKKAKDIEGNPNVAATFYW 463
EILEPNA L TVS EG PS R+VL K EGF F+TNYGS+KA+DI+ NP VA +FYW
Sbjct: 59 EILEPNAAALATVSAEGRPSNRYVLVKEATAEGFTFFTNYGSRKAEDIKSNPYVAISFYW 118
Query: 462 EILNRSVRIEGRVEKLSEDDSTKYFHTRPVVSQIAACASYQSTPIESRDVLCEREKLLEQ 283
L RSVRIEG EK+S +DS KYFH RP SQI A AS QS I SR L + E ++
Sbjct: 119 LPLRRSVRIEGVAEKISVEDSLKYFHQRPRASQIGAAASPQSQRIPSRSYLDDVEAAIKL 178
Query: 282 QYMIPGKEVPKPSYWGGYLLIPRSVEFWQGQRDRLHDRIKFRRPNKGEVS-DERLLHEGE 106
+ + P EVP P+ WGGYL+ P +EFWQGQ DRLHDRI+FRR E D +L+H+GE
Sbjct: 179 E-LGPDGEVPLPN-WGGYLVRPDLIEFWQGQTDRLHDRIRFRRGGGVESEVDSKLVHKGE 236
Query: 105 DGWVFERLSP 76
DGWV+ERL+P
Sbjct: 237 DGWVYERLAP 246
>BT011395-1|AAR96187.1| 251|Drosophila melanogaster AT25767p
protein.
Length = 251
Score = 83.4 bits (197), Expect = 2e-16
Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 4/165 (2%)
Frame = -2
Query: 636 LEPNAMCLXTVSQEGFPSARFVLCKGYGKEGFKFYTNYGSKKAKDIEGNPNVAATFYWEI 457
+ P C+ TV + G P R + G F+T GS++A +I NP+V+ F W
Sbjct: 59 VRPRLACMATVDKSGEPVTRLTSIEEVNSHGITFFTTLGSRQAGEISANPHVSLHFNWAP 118
Query: 456 LNRSVRIEGRVEKLSEDDSTKYFHTRP--VVSQIAACASYQSTPIESRDVLCER-EKLLE 286
L RSVRI G +L+E+ F P V I Y + +SR R + L
Sbjct: 119 LMRSVRIAGSAHQLTEEQVRDQFRRFPRHVQMSITHGPRYAAAEWQSRSGFFARIGQRLN 178
Query: 285 QQYMIPGKEVPKPSYWGGYLLIPRSVEFWQGQRDRL-HDRIKFRR 154
+E+P P WGGY+L P EF ++ R++FRR
Sbjct: 179 TWLGKQPEEIPMPHNWGGYILTPSLYEFGMLSGEKAGRTRVRFRR 223
>AE014297-655|AAN13382.1| 257|Drosophila melanogaster CG31473-PA
protein.
Length = 257
Score = 83.4 bits (197), Expect = 2e-16
Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 4/165 (2%)
Frame = -2
Query: 636 LEPNAMCLXTVSQEGFPSARFVLCKGYGKEGFKFYTNYGSKKAKDIEGNPNVAATFYWEI 457
+ P C+ TV + G P R + G F+T GS++A +I NP+V+ F W
Sbjct: 65 VRPRLACMATVDKSGEPVTRLTSIEEVNSHGITFFTTLGSRQAGEISANPHVSLHFNWAP 124
Query: 456 LNRSVRIEGRVEKLSEDDSTKYFHTRP--VVSQIAACASYQSTPIESRDVLCER-EKLLE 286
L RSVRI G +L+E+ F P V I Y + +SR R + L
Sbjct: 125 LMRSVRIAGSAHQLTEEQVRDQFRRFPRHVQMSITHGPRYAAAEWQSRSGFFARIGQRLN 184
Query: 285 QQYMIPGKEVPKPSYWGGYLLIPRSVEFWQGQRDRL-HDRIKFRR 154
+E+P P WGGY+L P EF ++ R++FRR
Sbjct: 185 TWLGKQPEEIPMPHNWGGYILTPSLYEFGMLSGEKAGRTRVRFRR 229
>BT024359-1|ABC86421.1| 213|Drosophila melanogaster IP08110p
protein.
Length = 213
Score = 40.3 bits (90), Expect = 0.002
Identities = 38/171 (22%), Positives = 77/171 (45%), Gaps = 10/171 (5%)
Frame = -2
Query: 621 MCLXTVSQEGFPSARFVLCKGYGKEGFKFY-TNYGSKKAKDIEGNPNVAATFYW-EILNR 448
M L TV +E R VL +G ++ FY T+ + K+++ NP TFY ++ ++
Sbjct: 38 MNLATVDEEFGVLNRTVLYRGLTQDNCVFYITHRYVRNFKNLQANPKACITFYMPDVKDK 97
Query: 447 S-------VRIEGRVE-KLSEDDSTKYFHTRPVVSQIAACASYQSTPIESRDVLCEREKL 292
+ VR+ G +L + + + + +QI PI D+ + ++
Sbjct: 98 AGNQNAWQVRLIGATAVELDQSEMDALWAKENLAAQIRGHICPCGEPINYDDLKAKHDQF 157
Query: 291 LEQQYMIPGKEVPKPSYWGGYLLIPRSVEFWQGQRDRLHDRIKFRRPNKGE 139
L GK + +P+ + + P+ +F + D++ DR+++R G+
Sbjct: 158 LLDH---RGKSIERPASYTAWKFQPQRWDFLKVGLDQIADRVQYRLQKDGK 205
>AE014298-1162|AAF46359.1| 213|Drosophila melanogaster CG15343-PA
protein.
Length = 213
Score = 40.3 bits (90), Expect = 0.002
Identities = 38/171 (22%), Positives = 77/171 (45%), Gaps = 10/171 (5%)
Frame = -2
Query: 621 MCLXTVSQEGFPSARFVLCKGYGKEGFKFY-TNYGSKKAKDIEGNPNVAATFYW-EILNR 448
M L TV +E R VL +G ++ FY T+ + K+++ NP TFY ++ ++
Sbjct: 38 MNLATVDEEFGVLNRTVLYRGLTQDNCVFYITHRYVRNFKNLQANPKACITFYMPDVKDK 97
Query: 447 S-------VRIEGRVE-KLSEDDSTKYFHTRPVVSQIAACASYQSTPIESRDVLCEREKL 292
+ VR+ G +L + + + + +QI PI D+ + ++
Sbjct: 98 AGNQNAWQVRLIGATAVELDQSEMDALWAKENLAAQIRGHICPCGEPINYDDLKAKHDQF 157
Query: 291 LEQQYMIPGKEVPKPSYWGGYLLIPRSVEFWQGQRDRLHDRIKFRRPNKGE 139
L GK + +P+ + + P+ +F + D++ DR+++R G+
Sbjct: 158 LLDH---RGKSIERPASYTAWKFQPQRWDFLKVGLDQIADRVQYRLQKDGK 205
>AY060784-1|AAL28332.1| 347|Drosophila melanogaster GH25366p
protein.
Length = 347
Score = 30.7 bits (66), Expect = 1.8
Identities = 18/42 (42%), Positives = 20/42 (47%)
Frame = +2
Query: 197 CQNSTDLGIKRYPPQ*LGFGTSLPGIIYCCSRSFSLSHRTSL 322
C N TD G P S G+IYCC FSL+HR L
Sbjct: 187 CCNQTDGGFGSKPG-----AESHAGLIYCCVGFFSLTHRLHL 223
>AF133269-1|AAD33042.1| 347|Drosophila melanogaster geranylgeranyl
transferase typeII beta-subunit protein.
Length = 347
Score = 30.7 bits (66), Expect = 1.8
Identities = 18/42 (42%), Positives = 20/42 (47%)
Frame = +2
Query: 197 CQNSTDLGIKRYPPQ*LGFGTSLPGIIYCCSRSFSLSHRTSL 322
C N TD G P S G+IYCC FSL+HR L
Sbjct: 187 CCNQTDGGFGSKPG-----AESHAGLIYCCVGFFSLTHRLHL 223
>AE014134-506|AAF51183.1| 347|Drosophila melanogaster CG18627-PA
protein.
Length = 347
Score = 30.7 bits (66), Expect = 1.8
Identities = 18/42 (42%), Positives = 20/42 (47%)
Frame = +2
Query: 197 CQNSTDLGIKRYPPQ*LGFGTSLPGIIYCCSRSFSLSHRTSL 322
C N TD G P S G+IYCC FSL+HR L
Sbjct: 187 CCNQTDGGFGSKPG-----AESHAGLIYCCVGFFSLTHRLHL 223
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,604,662
Number of Sequences: 53049
Number of extensions: 627608
Number of successful extensions: 1884
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1876
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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