Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14f18
(649 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13876-17|AAA21167.1| 253|Caenorhabditis elegans Hypothetical p... 157 5e-39
Z82052-6|CAB04829.4| 327|Caenorhabditis elegans Hypothetical pr... 31 0.93
U41010-2|AAF98588.1| 585|Caenorhabditis elegans Trehalase prote... 30 1.2
AJ512334-1|CAD54508.2| 585|Caenorhabditis elegans trehalase pro... 30 1.2
Z81517-7|CAE11306.1| 329|Caenorhabditis elegans Hypothetical pr... 29 3.8
AC006807-4|AAK84618.1| 904|Caenorhabditis elegans Hypothetical ... 29 3.8
AC006807-3|AAK84617.1| 883|Caenorhabditis elegans Hypothetical ... 29 3.8
Z68006-3|CAA91997.2| 633|Caenorhabditis elegans Hypothetical pr... 28 5.0
AL110500-6|CAB60429.1| 629|Caenorhabditis elegans Hypothetical ... 28 5.0
Z83120-9|CAB05589.2| 773|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z81515-11|CAB04199.2| 773|Caenorhabditis elegans Hypothetical p... 28 6.6
AF011893-1|AAC27124.1| 773|Caenorhabditis elegans maternal-effe... 28 6.6
Z82052-8|CAD89751.2| 325|Caenorhabditis elegans Hypothetical pr... 27 8.7
>U13876-17|AAA21167.1| 253|Caenorhabditis elegans Hypothetical
protein F57B9.1 protein.
Length = 253
Score = 157 bits (382), Expect = 5e-39
Identities = 77/161 (47%), Positives = 103/161 (63%), Gaps = 1/161 (0%)
Frame = -2
Query: 633 EPNAMCLXTVSQEGFPSARFVLCKGYGKEGFKFYTNYGSKKAKDIEGNPNVAATFYWEIL 454
E NA+ L TV ++ PS+R VL K Y GF FYTNY S+K +E NPN A FYW +
Sbjct: 81 EINAVSLSTVGKDLRPSSRMVLLKAYTPTGFSFYTNYTSRKGNQLEENPNAAMLFYWPKV 140
Query: 453 NRSVRIEGRVEKLSEDDSTKYFHTRPVVSQIAACASYQSTPIESRDVLCEREKLLEQQYM 274
NR +R+EG VEKL ++ + Y+++RPV S+I + +S QS + R+ L ++ L + +
Sbjct: 141 NRQIRVEGVVEKLPDEMAVAYWNSRPVASRIGSKSSDQSKVVPDREFLESKKVALTELSV 200
Query: 273 IPGKE-VPKPSYWGGYLLIPRSVEFWQGQRDRLHDRIKFRR 154
G + + KP WGGY LIPR EFWQGQ DRLHDRI F R
Sbjct: 201 REGAQAITKPESWGGYHLIPRYFEFWQGQSDRLHDRIVFER 241
>Z82052-6|CAB04829.4| 327|Caenorhabditis elegans Hypothetical
protein T25E12.11 protein.
Length = 327
Score = 30.7 bits (66), Expect = 0.93
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +3
Query: 48 YVPLMVSESMVKVAQKPTHLHLHVIIFHQTLL--LYWVF*I*CDHEAGPSDLARIRQTLE 221
Y+P+M+ + P H+ LH IF Q+ L L+ + + E G S + L+
Sbjct: 207 YIPIMIDIRKNRHLHSPQHMFLHNYIFFQSFLVVLFKLIILPFCFETGNSSIEFFIMMLK 266
Query: 222 --LRDILPSSLVSELLY 266
+ D+L + L+ +L Y
Sbjct: 267 VAIGDVLTAPLIIQLSY 283
>U41010-2|AAF98588.1| 585|Caenorhabditis elegans Trehalase protein
2 protein.
Length = 585
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 408 DDSTKYFHTR-PVVSQIAACASYQSTPIESRDVLCEREKLLEQQYMIPG 265
D S+++F P Q+A+ + Q P++ ++C K L + Y + G
Sbjct: 292 DFSSRFFAVHGPYAGQLASTRTSQLIPVDLNSIICGNMKTLSEMYTVCG 340
>AJ512334-1|CAD54508.2| 585|Caenorhabditis elegans trehalase
protein.
Length = 585
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 408 DDSTKYFHTR-PVVSQIAACASYQSTPIESRDVLCEREKLLEQQYMIPG 265
D S+++F P Q+A+ + Q P++ ++C K L + Y + G
Sbjct: 292 DFSSRFFAVHGPYAGQLASTRTSQLIPVDLNSIICGNMKTLSEMYTVCG 340
>Z81517-7|CAE11306.1| 329|Caenorhabditis elegans Hypothetical
protein F28B1.8 protein.
Length = 329
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3
Query: 408 LLKVFLLCPQFSLIYSVFPNKMWQQR*DSLLYL*PFYFHSLCKI*ILLY 554
++ + LLCP +I+SVF N + Q ++ +++ F FH + ILL+
Sbjct: 243 VVMIALLCPATYVIFSVF-NDYYNQAANNCMFI-SFAFHGIFSTLILLW 289
>AC006807-4|AAK84618.1| 904|Caenorhabditis elegans Hypothetical
protein Y58A7A.4 protein.
Length = 904
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -3
Query: 269 LVKKFRNQATGEDIS*FQGLSNSGKVRGTGFMIASNSEDPIK-EKCLMKDYY 117
+VKK N T F G N K F+I S+SE IK +CL ++Y
Sbjct: 520 MVKKENNLVTCYSSDDFCGFCNRKKKSFELFLIKSSSETKIKCTECLRNEFY 571
>AC006807-3|AAK84617.1| 883|Caenorhabditis elegans Hypothetical
protein Y58A7A.3 protein.
Length = 883
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -3
Query: 269 LVKKFRNQATGEDIS*FQGLSNSGKVRGTGFMIASNSEDPIK-EKCLMKDYY 117
+VKK N T F G N K F+I S+SE IK +CL ++Y
Sbjct: 501 MVKKENNLVTCYSSDDFCGFCNRKKKSFELFLIKSSSETKIKCTECLRNEFY 552
>Z68006-3|CAA91997.2| 633|Caenorhabditis elegans Hypothetical
protein K09C8.4 protein.
Length = 633
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = -2
Query: 465 WEIL-NRSVRIEGRVEKLSEDDSTKYFHTRPV-VSQIAACASYQSTPIESRDVLCEREKL 292
W ++ N+ +RI G+ +D Y H P + QI +YQ + LC L
Sbjct: 207 WRVVANKYLRIHGKTAMSDQDIFNAYIHDYPTEIIQIPCAYNYQLGALTKSKELCPETPL 266
>AL110500-6|CAB60429.1| 629|Caenorhabditis elegans Hypothetical
protein Y87G2A.6 protein.
Length = 629
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/89 (23%), Positives = 37/89 (41%)
Frame = -2
Query: 636 LEPNAMCLXTVSQEGFPSARFVLCKGYGKEGFKFYTNYGSKKAKDIEGNPNVAATFYWEI 457
LE A T++++ P V C K F +TN +D EGNP+V+ ++
Sbjct: 394 LETAAADNPTLNRKTDPDPLMVCC-ALRKNRFYLFTNTEPYNVEDDEGNPSVSGR---DV 449
Query: 456 LNRSVRIEGRVEKLSEDDSTKYFHTRPVV 370
N + E + L + K + ++
Sbjct: 450 FNERPKKEDLLTALDTEGGEKVLNKEAII 478
>Z83120-9|CAB05589.2| 773|Caenorhabditis elegans Hypothetical
protein R06A4.7 protein.
Length = 773
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = -2
Query: 603 SQEGFPSARFVLCKGYGKEGFKFYTNYGSKKAKDIEGNPNVAATFYWEILNRSVRIEG 430
SQ F SA VLC+ + ++GF + KK K EG N+ + L + I G
Sbjct: 264 SQREFSSAFPVLCENFAEKGFDPSSLEPWKKTKIAEGAQNLRNPTCYACLAYTCAIHG 321
>Z81515-11|CAB04199.2| 773|Caenorhabditis elegans Hypothetical
protein R06A4.7 protein.
Length = 773
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = -2
Query: 603 SQEGFPSARFVLCKGYGKEGFKFYTNYGSKKAKDIEGNPNVAATFYWEILNRSVRIEG 430
SQ F SA VLC+ + ++GF + KK K EG N+ + L + I G
Sbjct: 264 SQREFSSAFPVLCENFAEKGFDPSSLEPWKKTKIAEGAQNLRNPTCYACLAYTCAIHG 321
>AF011893-1|AAC27124.1| 773|Caenorhabditis elegans maternal-effect
sterile 2 protein.
Length = 773
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = -2
Query: 603 SQEGFPSARFVLCKGYGKEGFKFYTNYGSKKAKDIEGNPNVAATFYWEILNRSVRIEG 430
SQ F SA VLC+ + ++GF + KK K EG N+ + L + I G
Sbjct: 264 SQREFSSAFPVLCENFAEKGFDPSSLEPWKKTKIAEGAQNLRNPTCYACLAYTCAIHG 321
>Z82052-8|CAD89751.2| 325|Caenorhabditis elegans Hypothetical
protein T25E12.13 protein.
Length = 325
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 48 YVPLMVSESMVKVAQKPTHLHLHVIIFHQTLLL 146
Y+P+M+ + P H+ LH IF Q+ L+
Sbjct: 205 YIPIMIDIRKNRHLHSPQHMFLHNYIFFQSSLV 237
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,565,866
Number of Sequences: 27780
Number of extensions: 336137
Number of successful extensions: 894
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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