Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14f17
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   2.7  
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch...    27   2.7  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   4.7  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    26   6.2  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   8.2  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    25   8.2  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    25   8.2  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 510 QYFDEYDRNANRILLANQLRFFCLLSQCFLHETSYLAEYRL 632
           Q +D+    ANR L+      F L ++  L   +YL +YRL
Sbjct: 536 QTYDQTSSTANRYLIFYACVDFLLAAEVILRFFAYLPDYRL 576


>SPAC23H4.08 |||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 25/115 (21%), Positives = 49/115 (42%)
 Frame = -2

Query: 674 LVDYLLGNGFVDMFQTIFCKIACFVKKTLREEAKKTQLVGKENPISIPVIFIEILVLSLT 495
           ++   L NG + + Q+    +    + + +E  K T   G  + +SIP  F   L   L 
Sbjct: 161 MIQEYLSNGDLPLQQSTEDYVYDIYEASSKEPNKPTFAYGVIDALSIPDAFRSSLEQELV 220

Query: 494 IAFLNKYKKYRAKDRIDELLNESKEAIRQTNEFLEKWRLRRIPTDFSYLDEEPQE 330
              ++  K     D IDE  N ++   + +    ++W+      +F+Y D+  Q+
Sbjct: 221 SETVDSDKDDPLHDEIDEDSN-AESFYQNSYPDEDEWQDSSENDEFAYSDDAEQD 274


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 515 ILVLSLTIAFLNKYKKYRAKDRIDELLNESKE 420
           I ++  T+  LN +KKYR+ +RI  L     E
Sbjct: 152 ISLMQATLQLLNFFKKYRSVERIASLSRSISE 183


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 392 EKWRLRRIPTDFSYLDEEPQEIKPLKLEVPILHMAIIDTL 273
           EKW L+ I +   YL+ + +       E+P L  AI+D +
Sbjct: 603 EKWALKVIDSILPYLEAKDKVFMIFMSELPELTDAIVDKI 642


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
 Frame = -1

Query: 417  HTSDKRVSREMATA---EDTYRFFLLGRRTPRNQ 325
            HT++    R+ +T+   E+ + F L+G++ PRN+
Sbjct: 1063 HTTEPSERRDSSTSSHFEEHFVFSLMGKKVPRNK 1096


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 401 EFLEKWRLRRIPTDFSYLDEEPQEIKPL 318
           EF+ +W  R+IP    + D+ P    PL
Sbjct: 358 EFIGEWYPRKIPNPDYFDDDHPSHFGPL 385


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = -2

Query: 482 NKYKKYRAKDRIDELLNESKEAIRQTNEFLEKWRLR-----RIPTDFSYLDEEPQEIKPL 318
           +K +  R + RI++   ESK   ++ ++   +W+ R      IP  F Y D+   EI+  
Sbjct: 8   SKRRTTRLRSRIEKKAAESKRKQKRADKKNPQWKSRIPKDPGIPNSFPYKDKILAEIEEQ 67

Query: 317 K 315
           K
Sbjct: 68  K 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,984,638
Number of Sequences: 5004
Number of extensions: 63346
Number of successful extensions: 217
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)