Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14f17
         (720 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ316534-1|CAC48387.1| 1231|Homo sapiens serine/threonine protei...    34   0.59 
AF390018-1|AAK91995.1| 1243|Homo sapiens putative protein kinase...    34   0.59 
AL121586-7|CAB89415.1| 2442|Homo sapiens centrosomal protein 250...    33   1.4  
AF022655-1|AAC06349.1| 2442|Homo sapiens cep250 centrosome assoc...    33   1.4  
AF049105-1|AAC07988.1| 2442|Homo sapiens centrosomal Nek2-associ...    32   1.8  
L28957-1|AAA72127.1|  367|Homo sapiens CTP:phosphocholine cytidy...    32   2.4  
BC046355-1|AAH46355.1|  367|Homo sapiens phosphate cytidylyltran...    32   2.4  
BC113380-1|AAI13381.1| 1147|Homo sapiens KIAA1429 protein.             30   7.3  
BC112288-1|AAI12289.1| 1147|Homo sapiens hypothetical protein LO...    30   7.3  
AB037850-1|BAA92667.1| 1795|Homo sapiens KIAA1429 protein protein.     30   7.3  
AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing ...    30   9.6  

>AJ316534-1|CAC48387.1| 1231|Homo sapiens serine/threonine protein
            kinase protein.
          Length = 1231

 Score = 33.9 bits (74), Expect = 0.59
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = +2

Query: 557  QPIAFFLPPLAMFSSRNKLSCRISFGTYQRNHCLTNNRPGINLKRRKCTSKCST 718
            QP    + P AM SSR +   + SF T +RN    +  PG  + RR   S  ST
Sbjct: 1158 QPPPGIVAPAAMLSSRQRRLSKGSFPTSRRNSLQRSEPPGPGIMRRNSLSGSST 1211


>AF390018-1|AAK91995.1| 1243|Homo sapiens putative protein kinase WNK4
            protein.
          Length = 1243

 Score = 33.9 bits (74), Expect = 0.59
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = +2

Query: 557  QPIAFFLPPLAMFSSRNKLSCRISFGTYQRNHCLTNNRPGINLKRRKCTSKCST 718
            QP    + P AM SSR +   + SF T +RN    +  PG  + RR   S  ST
Sbjct: 1170 QPPPGIVAPAAMLSSRQRRLSKGSFPTSRRNSLQRSEPPGPGIMRRNSLSGSST 1223


>AL121586-7|CAB89415.1| 2442|Homo sapiens centrosomal protein 250kDa
           protein.
          Length = 2442

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -2

Query: 443 ELLNESKEAIRQTNEFLEK--WRLRRIPTDFSYLDEEPQEIKPLKLEVPILHMAI 285
           ELL +++E +RQ  E LE+  WRLRR+  +     +  Q  K  + E   LH+A+
Sbjct: 466 ELLQKAREELRQQLEVLEQEAWRLRRVNVELQLQGDSAQGQKEEQQEE--LHLAV 518


>AF022655-1|AAC06349.1| 2442|Homo sapiens cep250 centrosome
           associated protein protein.
          Length = 2442

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -2

Query: 443 ELLNESKEAIRQTNEFLEK--WRLRRIPTDFSYLDEEPQEIKPLKLEVPILHMAI 285
           ELL +++E +RQ  E LE+  WRLRR+  +     +  Q  K  + E   LH+A+
Sbjct: 466 ELLQKAREELRQQLEVLEQEAWRLRRVNVELQLQGDSAQGQKEEQQEE--LHLAV 518


>AF049105-1|AAC07988.1| 2442|Homo sapiens centrosomal
           Nek2-associated protein 1 protein.
          Length = 2442

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -2

Query: 443 ELLNESKEAIRQTNEFLEK--WRLRRIPTDFSYLDEEPQEIKPLKLEVPILHMAI 285
           ELL +++E +RQ  E LE+  WRLRR+  +     +  Q  K  + E   LH+A+
Sbjct: 466 ELLQKAREELRQQLEVLEQEAWRLRRVNVELQLQGDSAQGQKEDQQEE--LHLAV 518


>L28957-1|AAA72127.1|  367|Homo sapiens CTP:phosphocholine
           cytidylyltransferase protein.
          Length = 367

 Score = 31.9 bits (69), Expect = 2.4
 Identities = 12/38 (31%), Positives = 27/38 (71%)
 Frame = -2

Query: 500 LTIAFLNKYKKYRAKDRIDELLNESKEAIRQTNEFLEK 387
           L ++F+N+ KKY  ++R+D++  + K+   ++ EF++K
Sbjct: 230 LNVSFINE-KKYHLQERVDKVKEKVKDVEEKSKEFVQK 266


>BC046355-1|AAH46355.1|  367|Homo sapiens phosphate
           cytidylyltransferase 1, choline, alpha protein.
          Length = 367

 Score = 31.9 bits (69), Expect = 2.4
 Identities = 12/38 (31%), Positives = 27/38 (71%)
 Frame = -2

Query: 500 LTIAFLNKYKKYRAKDRIDELLNESKEAIRQTNEFLEK 387
           L ++F+N+ KKY  ++R+D++  + K+   ++ EF++K
Sbjct: 230 LNVSFINE-KKYHLQERVDKVKKKVKDVEEKSKEFVQK 266


>BC113380-1|AAI13381.1| 1147|Homo sapiens KIAA1429 protein.
          Length = 1147

 Score = 30.3 bits (65), Expect = 7.3
 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +3

Query: 75  LDTFR--SVQKSIIHIDVIRFVCQFIINRIR 161
           LDTF+  S ++S  HIDV+RF C   IN +R
Sbjct: 12  LDTFKHPSAEQSS-HIDVVRFPCVVYINEVR 41


>BC112288-1|AAI12289.1| 1147|Homo sapiens hypothetical protein
           LOC25962, isoform 2 protein.
          Length = 1147

 Score = 30.3 bits (65), Expect = 7.3
 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +3

Query: 75  LDTFR--SVQKSIIHIDVIRFVCQFIINRIR 161
           LDTF+  S ++S  HIDV+RF C   IN +R
Sbjct: 12  LDTFKHPSAEQSS-HIDVVRFPCVVYINEVR 41


>AB037850-1|BAA92667.1| 1795|Homo sapiens KIAA1429 protein protein.
          Length = 1795

 Score = 30.3 bits (65), Expect = 7.3
 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +3

Query: 75  LDTFR--SVQKSIIHIDVIRFVCQFIINRIR 161
           LDTF+  S ++S  HIDV+RF C   IN +R
Sbjct: 10  LDTFKHPSAEQSS-HIDVVRFPCVVYINEVR 39


>AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing 4
            protein.
          Length = 1362

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +2

Query: 143  YHQSDPVSILGHLREATSQIIVLNP 217
            +H+SDP S  GHLREA S +++ +P
Sbjct: 1048 HHKSDPYST-GHLREAPSPLMIHSP 1071


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,780,804
Number of Sequences: 237096
Number of extensions: 2071659
Number of successful extensions: 8144
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8144
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)