Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14f17
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99280-1|CAB16499.1|  225|Caenorhabditis elegans Hypothetical pr...    31   0.63 
AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z74040-1|CAA98514.2|  340|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z68221-6|CAB97237.1|  583|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z68217-12|CAA92468.2|  583|Caenorhabditis elegans Hypothetical p...    29   4.4  

>Z99280-1|CAB16499.1|  225|Caenorhabditis elegans Hypothetical
           protein Y57G11B.5 protein.
          Length = 225

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
 Frame = -2

Query: 701 YTFVFLSLFLVDYLLGNGFVDMFQTIFCKIACFVKKTLREEAKKTQLV-GKENPISIPVI 525
           YT   LS   +D L G  F  + Q      +CF K    EE++K +   G    + +  I
Sbjct: 133 YTACVLSEVPMDQLQGFTFKTVLQYAKPVTSCFAKHQECEESEKAEFYKGMMASVELVDI 192

Query: 524 FIEIL--VLSLTIAFLNKY-KKYRAKDRIDEL 438
           F+ IL  V S  + F++ + KK+  KD +D L
Sbjct: 193 FVPILEAVHSGNLEFIHTFDKKFNPKD-LDNL 223


>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
           protein F15E6.6 protein.
          Length = 1228

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/78 (29%), Positives = 37/78 (47%)
 Frame = -2

Query: 560 VGKENPISIPVIFIEILVLSLTIAFLNKYKKYRAKDRIDELLNESKEAIRQTNEFLEKWR 381
           V  ENP+++    IE+L L  +I    ++KK R    I   L     A R   EF +KW 
Sbjct: 218 VDSENPVTLKGDRIELL-LPKSIEQFKEFKKDRTV--ISSGLITRFIATRNPKEFSQKWI 274

Query: 380 LRRIPTDFSYLDEEPQEI 327
             +   +F+ + E P+ +
Sbjct: 275 TTKYVKEFNEVIENPETV 292


>Z74040-1|CAA98514.2|  340|Caenorhabditis elegans Hypothetical
           protein K10D6.2a protein.
          Length = 340

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 563 IAFFLPPLAMFSSRNKLSCRISFGTYQRNHCLTNN 667
           I FFL     F S +  S ++SF T +R+HC T N
Sbjct: 287 ITFFLS--LCFESTHPSSIKMSFHTEERSHCSTTN 319


>Z68221-6|CAB97237.1|  583|Caenorhabditis elegans Hypothetical
           protein F58G6.6 protein.
          Length = 583

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = -2

Query: 464 RAKDRIDELLNES-KEAIRQTNEFLEKWRLRRIPTDFSYLDEEPQEIKPLKLEVPILHMA 288
           RAK+ +D L  ++ KE   + N +  ++R+R I  +   LD   +E+    L++PI    
Sbjct: 500 RAKEAMDILPAKTMKELSEECNYYQTRYRVR-IEQNKEKLDRRIEEVWKKLLKMPIESQE 558

Query: 287 IIDTLGTTRS 258
           +ID +    S
Sbjct: 559 VIDFISVAHS 568


>Z68217-12|CAA92468.2|  583|Caenorhabditis elegans Hypothetical
           protein F58G6.6 protein.
          Length = 583

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = -2

Query: 464 RAKDRIDELLNES-KEAIRQTNEFLEKWRLRRIPTDFSYLDEEPQEIKPLKLEVPILHMA 288
           RAK+ +D L  ++ KE   + N +  ++R+R I  +   LD   +E+    L++PI    
Sbjct: 500 RAKEAMDILPAKTMKELSEECNYYQTRYRVR-IEQNKEKLDRRIEEVWKKLLKMPIESQE 558

Query: 287 IIDTLGTTRS 258
           +ID +    S
Sbjct: 559 VIDFISVAHS 568


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,336,075
Number of Sequences: 27780
Number of extensions: 346690
Number of successful extensions: 1054
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)