Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14f14
         (292 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   0.74 
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    24   3.9  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    24   3.9  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    24   3.9  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    24   5.2  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    24   5.2  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    23   6.9  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    23   9.1  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.6 bits (56), Expect = 0.74
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 43   FSQNFHIFIFYEQFLDNQGHLNNLRIILLFV 135
            FSQ FH F+     L +  HL  L + LLF+
Sbjct: 1019 FSQKFHGFLILHDNLKDHIHLEELWLNLLFL 1049


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 38  WFSLKTFTFSYFMNNF*ITRDILITLELSCY 130
           W+S+K  +F+  +NN     D+   LE +CY
Sbjct: 638 WYSVKPSSFTKGLNNKPSLEDVFSNLE-TCY 667


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 55  FHIFIFYEQFLDNQGHLNNLRIILLF 132
           F + +FY+   DN G LNN  +  LF
Sbjct: 308 FLVDLFYQFDRDNDGALNNEELSALF 333


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -2

Query: 225 ISETSKLTTMCWLGWAVAMSLFSY--IFLSPNHK 130
           +S +   T  C + W    SLF+Y  I +S NH+
Sbjct: 315 VSTSDPYTLACLVSWRDNASLFNYAAIIISFNHQ 348


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -3

Query: 272  LEKIVSLTKTNEIKKKYLKH 213
            +EK++ L +T+ I+K +L+H
Sbjct: 1681 MEKLLGLVETSIIRKTFLQH 1700


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -2

Query: 123 DNSKVIKMSLVI*KLFIKYENVKVLRE--NH 37
           DN KVI +     +LF KY+++ +++E  NH
Sbjct: 17  DNDKVIVVVTKNLELFKKYDDINLIKEAYNH 47


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 112 LRIILLFVIWRQKYIGEQRHC 174
           L +I+  V W +  IG  RHC
Sbjct: 2   LAVIVAIVRWERAMIGLLRHC 22


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 70  FYEQFLDNQGHLNNLRIIL 126
           ++E+ LDNQ  L +LRI L
Sbjct: 657 YHEELLDNQQKLYDLRIEL 675


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,171,815
Number of Sequences: 5004
Number of extensions: 20685
Number of successful extensions: 50
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)