Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14f14
         (292 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0453 - 17886095-17886868,17887928-17888043,17888300-178884...    28   1.4  
04_03_0776 - 19463473-19464252,19464354-19464849,19465460-19465911     27   2.5  
11_01_0374 - 2843405-2843508,2844134-2844239,2844327-2844409,284...    27   3.3  
03_05_0472 - 24655384-24655764,24655904-24656119,24656197-246563...    26   4.4  
11_07_0005 + 27237673-27237885,27238030-27238195,27238439-272386...    26   5.8  
09_02_0276 - 6633919-6634296,6635432-6635533,6635636-6635728,663...    26   5.8  
08_02_1079 + 24190453-24190483,24191201-24191475,24191619-241919...    26   5.8  
05_05_0298 - 23926266-23926442,23926573-23926632,23926822-239270...    25   7.7  

>11_04_0453 -
           17886095-17886868,17887928-17888043,17888300-17888423,
           17889734-17889963,17891395-17891452
          Length = 433

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 167 LCSPIYFCRQITNSKIILRLLRCP 96
           L S +YFC+++TNS +I     CP
Sbjct: 228 LQSVLYFCQRMTNSALITVAKNCP 251


>04_03_0776 - 19463473-19464252,19464354-19464849,19465460-19465911
          Length = 575

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 167 LCSPIYFCRQITNSKIILRLLRCP 96
           L S +YFC Q+TN+ ++     CP
Sbjct: 369 LNSLLYFCHQMTNAALVTVAKNCP 392


>11_01_0374 -
           2843405-2843508,2844134-2844239,2844327-2844409,
           2844886-2845078,2845527-2845662,2846185-2846264,
           2846348-2846932,2847058-2847126,2847203-2847347,
           2847442-2847542,2848208-2849066,2849397-2849536,
           2849606-2849783,2849885-2850287,2850770-2850833,
           2851223-2851278,2851470-2851572
          Length = 1134

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 8   VIELTMDTTEWFSLKTFTFSYFMNNF*ITRDILI 109
           +IE     T W++L  F  SYF+ +  I  +ILI
Sbjct: 11  LIEEAKVRTVWWALCVFAISYFLTHVGIGEEILI 44


>03_05_0472 -
           24655384-24655764,24655904-24656119,24656197-24656321,
           24656432-24656621,24656817-24656911,24657230-24657454,
           24657940-24658003
          Length = 431

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 187 WLGCSNVFVLLYISVA 140
           WLG S VF L+YI +A
Sbjct: 169 WLGLSTVFSLIYIMIA 184


>11_07_0005 +
           27237673-27237885,27238030-27238195,27238439-27238692,
           27238777-27238989,27239063-27239155,27239258-27239359,
           27240495-27240872
          Length = 472

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = +1

Query: 37  MVFSQNFHIFIFYEQFLDNQGHLNN 111
           ++     H+F  ++Q+ D++G++NN
Sbjct: 181 VIIRTKVHVFPHWKQYKDDEGYINN 205


>09_02_0276 -
           6633919-6634296,6635432-6635533,6635636-6635728,
           6635802-6636014,6636099-6636352,6636596-6636761,
           6636906-6637118
          Length = 472

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = +1

Query: 37  MVFSQNFHIFIFYEQFLDNQGHLNN 111
           ++     H+F  ++Q+ D++G++NN
Sbjct: 181 VIIRTKVHVFPHWKQYKDDEGYINN 205


>08_02_1079 +
           24190453-24190483,24191201-24191475,24191619-24191977,
           24192066-24192306,24192391-24192603,24192677-24192769,
           24192872-24192973,24194104-24194481
          Length = 563

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = +1

Query: 37  MVFSQNFHIFIFYEQFLDNQGHLNN 111
           ++     H+F  ++Q+ D++G++NN
Sbjct: 272 VIIRTKVHVFPHWKQYKDDEGYINN 296


>05_05_0298 -
           23926266-23926442,23926573-23926632,23926822-23927029,
           23927471-23927703,23928806-23928860,23928943-23929649
          Length = 479

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 164 CSPIYFCRQITNSKIILRLLRCPWLSKNCS 75
           C P +        + IL+LLR PW+  +C+
Sbjct: 237 CPPFHAATNREKQQRILQLLRHPWVIGDCA 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,709,869
Number of Sequences: 37544
Number of extensions: 108851
Number of successful extensions: 248
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)