Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14f14
         (292 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40028-10|AAA81121.3|  363|Caenorhabditis elegans Serpentine rec...    29   0.42 
Z69794-2|CAA93681.1|  786|Caenorhabditis elegans Hypothetical pr...    26   3.9  
Z77663-6|CAB01207.1|  360|Caenorhabditis elegans Hypothetical pr...    26   5.2  
AL023828-25|CAD56605.1|  167|Caenorhabditis elegans Hypothetical...    25   6.8  
AF100305-1|AAC68918.1|  197|Caenorhabditis elegans Hypothetical ...    25   6.8  
U97007-5|AAB52295.1|  564|Caenorhabditis elegans Hypothetical pr...    25   9.1  
AF043703-3|AAK21500.1|  357|Caenorhabditis elegans Calcium chann...    25   9.1  

>U40028-10|AAA81121.3|  363|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 40 protein.
          Length = 363

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +1

Query: 43  FSQNFHIFIFYEQFLDNQGHLNNLRIILLFV----IWRQKYIGEQRH 171
           F Q + IF++Y     N G  N + I+ L V    +WR+K+ G  RH
Sbjct: 282 FFQEYEIFLYYAIDWVNAG--NTVAIVPLTVALEPVWRRKFFGNIRH 326


>Z69794-2|CAA93681.1|  786|Caenorhabditis elegans Hypothetical
           protein R03G8.4 protein.
          Length = 786

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -2

Query: 216 TSKLTTMCWL--GWAVAMSLFSYIFLSPNH 133
           T K     WL  G+A  M+ + Y FL PN+
Sbjct: 343 TMKFWDQLWLNEGFATYMTAYGYTFLDPNY 372


>Z77663-6|CAB01207.1|  360|Caenorhabditis elegans Hypothetical
           protein F53F4.7 protein.
          Length = 360

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 108 IKMSLVI*KLFIKYENVKVLREN 40
           I +SL+   ++  Y+N+KVLR+N
Sbjct: 14  IPLSLIFNNIYQNYKNLKVLRKN 36


>AL023828-25|CAD56605.1|  167|Caenorhabditis elegans Hypothetical
           protein Y17G7B.22 protein.
          Length = 167

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 88  LKIVHKI*KCESFERKPFSCIHC 20
           L+  HK+ K + F++ P SC HC
Sbjct: 136 LRKKHKMTKSDFFKKYPNSCDHC 158


>AF100305-1|AAC68918.1|  197|Caenorhabditis elegans Hypothetical
           protein W04B5.4 protein.
          Length = 197

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 174 LQPNQANTLWLAWM 215
           ++P QA+ LW+AW+
Sbjct: 51  MRPKQASKLWMAWL 64


>U97007-5|AAB52295.1|  564|Caenorhabditis elegans Hypothetical
           protein ZC196.5 protein.
          Length = 564

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -1

Query: 277 KISKKLFHLQKPMKLKK 227
           KISKK   LQ+P+KLK+
Sbjct: 304 KISKKCDSLQEPVKLKR 320


>AF043703-3|AAK21500.1|  357|Caenorhabditis elegans Calcium channel,
           beta subunit protein2 protein.
          Length = 357

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = -3

Query: 161 SPIYFCRQITNSKIILRLLR 102
           SPI+F  +++++KI+ +LLR
Sbjct: 264 SPIFFLIRVSDNKILAKLLR 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,367,522
Number of Sequences: 27780
Number of extensions: 115029
Number of successful extensions: 367
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)