Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14f13
(495 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 195 2e-50
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 184 3e-47
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 182 1e-46
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 70 1e-12
03_01_0404 + 3138624-3140096 31 0.38
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045... 28 3.6
03_01_0646 + 4742398-4742994,4743681-4744085 27 6.3
02_02_0138 + 7114949-7115656,7116388-7116435,7116830-7117988,711... 27 6.3
04_04_0883 + 29079315-29079715,29080918-29081038,29081127-290812... 27 8.3
03_06_0455 - 34054428-34054619,34054729-34054867,34054945-34055084 27 8.3
02_05_1211 + 34956601-34956850,34956950-34957102,34957562-349576... 27 8.3
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 195 bits (475), Expect = 2e-50
Identities = 86/140 (61%), Positives = 117/140 (83%)
Frame = -2
Query: 422 DKFQHILXIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 243
+ FQHIL ++NTN+DGK+K+MFA+T+IKG+GRR+SNI KKADID++KRAGE T EE+E+
Sbjct: 3 EDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELER 62
Query: 242 IITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRSL 63
++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+R
Sbjct: 63 LMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHY 122
Query: 62 XGAFVCVVQAHLRPTGRRGR 3
G + V H + TGRRG+
Sbjct: 123 WG--LRVRGQHTKTTGRRGK 140
>07_01_0525 +
3904388-3904390,3904485-3904645,3905347-3905394,
3905714-3905902,3906872-3906977
Length = 168
Score = 184 bits (448), Expect = 3e-47
Identities = 90/162 (55%), Positives = 121/162 (74%), Gaps = 16/162 (9%)
Frame = -2
Query: 440 MSLVIPDKFQHILXIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 276
MSL+ + FQHIL ++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRSGVVC 60
Query: 275 -----------AGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLD 129
AGE T EE+E+++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD
Sbjct: 61 YYLAVHNYVEWAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALD 120
Query: 128 SKLREDLERLKKIRAHRGMRSLXGAFVCVVQAHLRPTGRRGR 3
KLR+DLERLKKIR HRG+R G + V H + TGRRG+
Sbjct: 121 MKLRDDLERLKKIRNHRGLRHYWG--LRVRGQHTKTTGRRGK 160
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 182 bits (444), Expect = 1e-46
Identities = 90/164 (54%), Positives = 121/164 (73%), Gaps = 18/164 (10%)
Frame = -2
Query: 440 MSLVIPDKFQHILXIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 276
MSL+ + FQHIL ++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRQEPPP 60
Query: 275 -------------AGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSN 135
AGE T EE+E+++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+
Sbjct: 61 PPSRRQISVMVGGAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNA 120
Query: 134 LDSKLREDLERLKKIRAHRGMRSLXGAFVCVVQAHLRPTGRRGR 3
LD KLR+DLERLKKIR HRG+R G + V H + TGRRG+
Sbjct: 121 LDMKLRDDLERLKKIRNHRGLRHYWG--LRVRGQHTKTTGRRGK 162
>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
Length = 78
Score = 69.7 bits (163), Expect = 1e-12
Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Frame = -2
Query: 197 WFL-NRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRSLXGAFVCVVQAHLRP 21
W L R+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+R G + V H +
Sbjct: 7 WILPERKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWG--LRVRGQHTKT 64
Query: 20 TGRRGR 3
TGRRG+
Sbjct: 65 TGRRGK 70
>03_01_0404 + 3138624-3140096
Length = 490
Score = 31.5 bits (68), Expect = 0.38
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -2
Query: 167 DGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRSL 63
+G Y QL++ LDS ++D R++K+ RG+R +
Sbjct: 403 EGVYVQLSNIYLDSNRKDDARRVRKLIGSRGIRKV 437
>06_03_1275 +
28903961-28904123,28904225-28904322,28904406-28904550,
28904690-28904814,28904957-28905049,28905297-28905362,
28905459-28905524,28905790-28905870,28905947-28906123,
28906212-28906287,28906394-28906521,28906639-28906950
Length = 509
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 295 SAFLRTMLEYLRPTPLIAVIANITL 369
S+FL TM EY+R P A +AN T+
Sbjct: 255 SSFLGTMEEYIREAPRTAPVANKTV 279
>03_01_0646 + 4742398-4742994,4743681-4744085
Length = 333
Score = 27.5 bits (58), Expect = 6.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 357 CDDGYQRCWPEVLQHCSQKSR 295
CDD Y+R W +L+ ++SR
Sbjct: 296 CDDSYRRAWSRLLRRLVRESR 316
>02_02_0138 +
7114949-7115656,7116388-7116435,7116830-7117988,
7118336-7118424,7118697-7118732
Length = 679
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 113 DLERLKKIRAHRGMRSLXGAFVCVVQAHLR 24
++ER ++ + G+R + C+VQAHLR
Sbjct: 169 EMERCLELASKWGLRLSGYTYKCIVQAHLR 198
>04_04_0883 +
29079315-29079715,29080918-29081038,29081127-29081246,
29081646-29081876,29081951-29082517
Length = 479
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 266 CTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGK-YSQLTSSNL 132
C EE ++ M P + + DW +N D+V+ + Y+++ + N+
Sbjct: 236 CNTEEDCALLASMLPPVEAALLDWAINLMADVVEHENYNKMNARNI 281
>03_06_0455 - 34054428-34054619,34054729-34054867,34054945-34055084
Length = 156
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 187 FRNQSGILYCLGFDMIVIIFSTSSSVHSPARLS 285
F N YCLG +I ++++T+ RLS
Sbjct: 40 FDNYPEYTYCLGISIIAVLYTTAQVTRDVHRLS 72
>02_05_1211 +
34956601-34956850,34956950-34957102,34957562-34957674,
34958092-34958198,34958289-34958404,34958502-34958577,
34958652-34958693,34958809-34958917,34959102-34959199,
34959297-34959390,34959517-34959642
Length = 427
Score = 27.1 bits (57), Expect = 8.3
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = -2
Query: 299 ADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDS-- 126
+ +DLD R+G T V K T+ NP + ++ + + KD Y +LT+ N ++
Sbjct: 190 SSVDLDIRSGSNTRHVVLKRQTVTLNPVRSRMCE--IPGAKDNSKVGYIKLTTFNQNAAG 247
Query: 125 KLREDLERLKK 93
++E L++L++
Sbjct: 248 SVKEALQKLRE 258
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,452,937
Number of Sequences: 37544
Number of extensions: 289352
Number of successful extensions: 743
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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