Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14f13
(495 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-11|CAB16517.1| 154|Caenorhabditis elegans Hypothetical p... 201 3e-52
Z81052-5|CAB02876.1| 512|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p... 27 5.7
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z73899-2|CAA98074.1| 536|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z54306-6|CAA91090.2| 321|Caenorhabditis elegans Hypothetical pr... 27 7.5
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr... 27 7.5
AL031268-1|CAD59161.1| 321|Caenorhabditis elegans Hypothetical ... 27 7.5
AY525080-1|AAS13529.1| 362|Caenorhabditis elegans serine or cys... 27 9.9
AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical ... 27 9.9
AF067624-3|AAM81100.2| 678|Caenorhabditis elegans Hypothetical ... 27 9.9
AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical ... 27 9.9
AC087794-5|AAM48555.1| 362|Caenorhabditis elegans Serpin protei... 27 9.9
>Z99281-11|CAB16517.1| 154|Caenorhabditis elegans Hypothetical
protein Y57G11C.16 protein.
Length = 154
Score = 201 bits (490), Expect = 3e-52
Identities = 94/146 (64%), Positives = 118/146 (80%)
Frame = -2
Query: 440 MSLVIPDKFQHILXIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 261
MSL+IP+KFQHI +MNTNIDG RKV +A+TAIKGVGRR++ + +KAD+D++KRAGE T
Sbjct: 1 MSLIIPEKFQHIHRVMNTNIDGNRKVPYALTAIKGVGRRFAFVCCRKADVDVNKRAGELT 60
Query: 260 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 81
EE+ +KI+TIM NP QYKIP+WFLNRQKDI DGK QL S+ +D+KLREDLER+KKIR H
Sbjct: 61 EEDFDKIVTIMQNPSQYKIPNWFLNRQKDIKDGKTGQLLSTAVDNKLREDLERMKKIRLH 120
Query: 80 RGMRSLXGAFVCVVQAHLRPTGRRGR 3
RG+R G + V H + TGR+GR
Sbjct: 121 RGLRHYWG--LRVRGQHTKTTGRKGR 144
>Z81052-5|CAB02876.1| 512|Caenorhabditis elegans Hypothetical
protein D2023.6 protein.
Length = 512
Score = 28.7 bits (61), Expect = 2.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 122 LREDLERLKKIRAHRGMRSLXGAFVCVV 39
L+ DL+ ++K+ + G+ L G F C+V
Sbjct: 360 LKPDLQEIRKVASQMGVGELYGLFACMV 387
>Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -2
Query: 209 KIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRS 66
+ PD++ N D+V+G + S+ D+ D E +K A R +S
Sbjct: 730 RAPDFYTNNAIDLVEGHWHAADESDHDNLKASDEENEQKSAAARKSKS 777
>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -2
Query: 209 KIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRS 66
+ PD++ N D+V+G + S+ D+ D E +K A R +S
Sbjct: 730 RAPDFYTNNAIDLVEGHWHAADESDHDNLKASDEENEQKSAAARKSKS 777
>Z73899-2|CAA98074.1| 536|Caenorhabditis elegans Hypothetical
protein ZK829.4 protein.
Length = 536
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = -2
Query: 224 NPRQYKIPDWFLNRQKDIVDGKYS-QLTSSNLDSKLREDL 108
NP YK+ D++ N+ +++ K + +L S++L K +++L
Sbjct: 40 NPSFYKMVDFYFNKGAEVIAPKLAEELKSNSLSQKDKKNL 79
>Z54306-6|CAA91090.2| 321|Caenorhabditis elegans Hypothetical
protein B0457.2 protein.
Length = 321
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -1
Query: 147 DLLQLGFKTP*RFGEAQEDSRSQRDAI--IXWGLRVRGPGT 31
DL +G KTP F Q+D ++ I I G+ V+ PGT
Sbjct: 267 DLGIMGSKTPEAFRRGQDDPNAKGGGIVGINGGVGVKAPGT 307
>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical protein
C13F10.4 protein.
Length = 2076
Score = 27.1 bits (57), Expect = 7.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 357 CDDGYQRCWPEVLQHCS 307
C + YQ CWP +L CS
Sbjct: 1512 CREYYQICWPPILLACS 1528
>AL031268-1|CAD59161.1| 321|Caenorhabditis elegans Hypothetical
protein B0457.2 protein.
Length = 321
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -1
Query: 147 DLLQLGFKTP*RFGEAQEDSRSQRDAI--IXWGLRVRGPGT 31
DL +G KTP F Q+D ++ I I G+ V+ PGT
Sbjct: 267 DLGIMGSKTPEAFRRGQDDPNAKGGGIVGINGGVGVKAPGT 307
>AY525080-1|AAS13529.1| 362|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 362
Score = 26.6 bits (56), Expect = 9.9
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = -2
Query: 440 MSLVIPDKFQHILXIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 261
+ L P Q I +NT +GK K + +IK N + KAD D DK G
Sbjct: 116 LDLTTPAAVQEINSFVNTATNGKIKNIATQDSIKDAIALLINSIYFKADWD-DKFDGMSV 174
Query: 260 EEE 252
E+
Sbjct: 175 SEQ 177
>AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical
protein M01B12.4b protein.
Length = 644
Score = 26.6 bits (56), Expect = 9.9
Identities = 19/75 (25%), Positives = 31/75 (41%)
Frame = -2
Query: 311 VLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNL 132
VLK+ I L KR + E+E K +T+ K G + T + L
Sbjct: 45 VLKREQIALQKRMQQLNEDEERKKVTLAKQHEVSSRIAAITKSPKSFAFGSSTPRTLAYL 104
Query: 131 DSKLREDLERLKKIR 87
D+ + + + KK+R
Sbjct: 105 DNLPKSEQQYDKKLR 119
>AF067624-3|AAM81100.2| 678|Caenorhabditis elegans Hypothetical
protein M01B12.4c protein.
Length = 678
Score = 26.6 bits (56), Expect = 9.9
Identities = 19/75 (25%), Positives = 31/75 (41%)
Frame = -2
Query: 311 VLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNL 132
VLK+ I L KR + E+E K +T+ K G + T + L
Sbjct: 45 VLKREQIALQKRMQQLNEDEERKKVTLAKQHEVSSRIAAITKSPKSFAFGSSTPRTLAYL 104
Query: 131 DSKLREDLERLKKIR 87
D+ + + + KK+R
Sbjct: 105 DNLPKSEQQYDKKLR 119
>AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical
protein M01B12.4a protein.
Length = 634
Score = 26.6 bits (56), Expect = 9.9
Identities = 19/75 (25%), Positives = 31/75 (41%)
Frame = -2
Query: 311 VLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNL 132
VLK+ I L KR + E+E K +T+ K G + T + L
Sbjct: 45 VLKREQIALQKRMQQLNEDEERKKVTLAKQHEVSSRIAAITKSPKSFAFGSSTPRTLAYL 104
Query: 131 DSKLREDLERLKKIR 87
D+ + + + KK+R
Sbjct: 105 DNLPKSEQQYDKKLR 119
>AC087794-5|AAM48555.1| 362|Caenorhabditis elegans Serpin protein 3
protein.
Length = 362
Score = 26.6 bits (56), Expect = 9.9
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = -2
Query: 440 MSLVIPDKFQHILXIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 261
+ L P Q I +NT +GK K + +IK N + KAD D DK G
Sbjct: 116 LDLTTPAAVQEINSFVNTATNGKIKNIATQDSIKDAIALLINSIYFKADWD-DKFDGMSV 174
Query: 260 EEE 252
E+
Sbjct: 175 SEQ 177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,096,641
Number of Sequences: 27780
Number of extensions: 248983
Number of successful extensions: 718
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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