Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14f12
         (415 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0066 - 537729-538163                                            132   1e-31
10_07_0174 + 13815478-13815903                                        131   2e-31
06_01_0889 - 6807449-6809257                                           30   0.84 
03_02_0324 - 7463482-7463601,7463660-7463736,7463827-7463883,746...    28   2.6  
06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421...    27   4.5  
07_01_0358 - 2631214-2632992                                           27   5.9  
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742...    27   5.9  

>03_01_0066 - 537729-538163
          Length = 144

 Score =  132 bits (318), Expect = 1e-31
 Identities = 61/101 (60%), Positives = 81/101 (80%)
 Frame = -2

Query: 324 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 145
           IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR++   VRGIS+KLQEE
Sbjct: 17  IEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRRIQRGPVRGISLKLQEE 76

Query: 144 ERERRDNYVPEVSALEHDIXEVDPDTKDMLKMLDFNNINGL 22
           ERERR ++VP+ SALE D   VD +T DML  L   ++ G+
Sbjct: 77  ERERRMDFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGV 117


>10_07_0174 + 13815478-13815903
          Length = 141

 Score =  131 bits (316), Expect = 2e-31
 Identities = 60/102 (58%), Positives = 81/102 (79%)
 Frame = -2

Query: 324 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 145
           IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF THLMRR++   VRGIS+KLQEE
Sbjct: 17  IEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRGPVRGISLKLQEE 76

Query: 144 ERERRDNYVPEVSALEHDIXEVDPDTKDMLKMLDFNNINGLQ 19
           ERERR ++VPE SALE +   VD +T +ML  L   ++ G++
Sbjct: 77  ERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVE 118


>06_01_0889 - 6807449-6809257
          Length = 602

 Score = 29.9 bits (64), Expect = 0.84
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 192 LRHSQVRGI-SIKLQEEERERRDNYVPEVSALEHDIXEVDPD 70
           LRH Q R I ++ +    R R + YVP+     HD+ E D +
Sbjct: 487 LRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAEEDKE 528


>03_02_0324 -
           7463482-7463601,7463660-7463736,7463827-7463883,
           7464154-7464246,7464528-7464654,7464836-7466794
          Length = 810

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 186 HSQVRGISIKLQEEERERRD-NYVPEVSALEHDIXEVDPD 70
           H Q + I  KL E  R  R+  Y PEV A  HD+ E D +
Sbjct: 551 HPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKE 590


>06_01_0587 -
           4211917-4212021,4212250-4212478,4213426-4213759,
           4215116-4215186,4215374-4215493,4216353-4216771,
           4216885-4217336,4217434-4217812
          Length = 702

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 72  DTKDMLKMLDFNNINGLQLTT 10
           DTKDMLK +D+  + G  +TT
Sbjct: 597 DTKDMLKNVDWKTVGGGSVTT 617


>07_01_0358 - 2631214-2632992
          Length = 592

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 237 LRNKIAGFATHLMRRLRHSQVRGISIKLQE-EERERRDNYVPEVSALEHDIXEVDPDT 67
           LRN +  F   +M    H +   I   L E  ER RR+ Y+P  S +  DI E + +T
Sbjct: 465 LRNSVYEF---VMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKET 519


>01_06_1406 -
           37073548-37073822,37073892-37074111,37074200-37074246,
           37074404-37074576,37075161-37075238,37075751-37075813,
           37075889-37075961,37076150-37076189,37076302-37076368,
           37076719-37078472,37079128-37079230,37080041-37080078,
           37080221-37080347,37081944-37082152
          Length = 1088

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +1

Query: 73  GVYFXDVMFESRHFWDIVVTPLTLLFLKFDRDSSHLRVS 189
           G+ F D+    RH W++   P  ++ L++ +D+  + +S
Sbjct: 818 GLKFWDLRDPYRHLWELTTAPRAVISLQWLKDARGVVIS 856


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,854,181
Number of Sequences: 37544
Number of extensions: 171693
Number of successful extensions: 433
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)