Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14f12
         (415 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M22142-1|AAA28869.1|  131|Drosophila melanogaster protein ( D.me...   192   2e-49
BT001651-1|AAN71406.1|  131|Drosophila melanogaster RE44119p pro...   192   2e-49
AJ271817-3|CAB72251.1|  131|Drosophila melanogaster ribosomal pr...   192   2e-49
AE014296-1654|AAF50272.1|  131|Drosophila melanogaster CG3922-PB...   192   2e-49
AE014296-147|AAF47422.2| 1978|Drosophila melanogaster CG13889-PA...    27   7.4  
AE014134-2053|AAF53088.2| 2013|Drosophila melanogaster CG6392-PA...    27   9.8  

>M22142-1|AAA28869.1|  131|Drosophila melanogaster protein (
           D.melanogaster ribosomalprotein S17 gene, complete cds.
           ).
          Length = 131

 Score =  192 bits (467), Expect = 2e-49
 Identities = 91/104 (87%), Positives = 96/104 (92%)
 Frame = -2

Query: 324 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 145
           IEKYYTRLTLDF TNKRICEE+AIIPTKPLRNKIAG+ THLM RLRHSQVRGISIKLQEE
Sbjct: 17  IEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGISIKLQEE 76

Query: 144 ERERRDNYVPEVSALEHDIXEVDPDTKDMLKMLDFNNINGLQLT 13
           ERERRDNYVP VSALE DI EVD DTK+MLK+LDF+NI GLQLT
Sbjct: 77  ERERRDNYVPAVSALEQDIIEVDADTKEMLKLLDFHNIRGLQLT 120


>BT001651-1|AAN71406.1|  131|Drosophila melanogaster RE44119p
           protein.
          Length = 131

 Score =  192 bits (467), Expect = 2e-49
 Identities = 91/104 (87%), Positives = 96/104 (92%)
 Frame = -2

Query: 324 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 145
           IEKYYTRLTLDF TNKRICEE+AIIPTKPLRNKIAG+ THLM RLRHSQVRGISIKLQEE
Sbjct: 17  IEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGISIKLQEE 76

Query: 144 ERERRDNYVPEVSALEHDIXEVDPDTKDMLKMLDFNNINGLQLT 13
           ERERRDNYVP VSALE DI EVD DTK+MLK+LDF+NI GLQLT
Sbjct: 77  ERERRDNYVPAVSALEQDIIEVDADTKEMLKLLDFHNIRGLQLT 120


>AJ271817-3|CAB72251.1|  131|Drosophila melanogaster ribosomal
           protein S17 protein.
          Length = 131

 Score =  192 bits (467), Expect = 2e-49
 Identities = 91/104 (87%), Positives = 96/104 (92%)
 Frame = -2

Query: 324 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 145
           IEKYYTRLTLDF TNKRICEE+AIIPTKPLRNKIAG+ THLM RLRHSQVRGISIKLQEE
Sbjct: 17  IEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGISIKLQEE 76

Query: 144 ERERRDNYVPEVSALEHDIXEVDPDTKDMLKMLDFNNINGLQLT 13
           ERERRDNYVP VSALE DI EVD DTK+MLK+LDF+NI GLQLT
Sbjct: 77  ERERRDNYVPAVSALEQDIIEVDADTKEMLKLLDFHNIRGLQLT 120


>AE014296-1654|AAF50272.1|  131|Drosophila melanogaster CG3922-PB
           protein.
          Length = 131

 Score =  192 bits (467), Expect = 2e-49
 Identities = 91/104 (87%), Positives = 96/104 (92%)
 Frame = -2

Query: 324 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 145
           IEKYYTRLTLDF TNKRICEE+AIIPTKPLRNKIAG+ THLM RLRHSQVRGISIKLQEE
Sbjct: 17  IEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGISIKLQEE 76

Query: 144 ERERRDNYVPEVSALEHDIXEVDPDTKDMLKMLDFNNINGLQLT 13
           ERERRDNYVP VSALE DI EVD DTK+MLK+LDF+NI GLQLT
Sbjct: 77  ERERRDNYVPAVSALEQDIIEVDADTKEMLKLLDFHNIRGLQLT 120


>AE014296-147|AAF47422.2| 1978|Drosophila melanogaster CG13889-PA
            protein.
          Length = 1978

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
 Frame = -2

Query: 288  DTNKRICEEIAIIPT-----KPLRNKIAGFATHLMRRLRHSQVRGISIKL-QEEERERRD 127
            +  K+  EE+  +PT     K L++K+      L  R     +    +KL QE E+    
Sbjct: 1386 EEEKQDTEELKEVPTLHKQIKDLKDKLEYSERSLKTREEEVDILKEKLKLCQEREKSVES 1445

Query: 126  NYVPEVSALEHDIXEVDPDTKDMLKML 46
               PE+  L   + E D   KD++  L
Sbjct: 1446 TVNPELDQLRIFLDEKDKHIKDLMDTL 1472


>AE014134-2053|AAF53088.2| 2013|Drosophila melanogaster CG6392-PA
            protein.
          Length = 2013

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
 Frame = -2

Query: 267  EEIAIIPTK--PLRNKIAGFATHLMRRLRHSQVRGISI-KLQEEERERRDNYVPEVSALE 97
            +E+A + T    L+++++     L   LR  Q++  +I +LQ +  E  +  +    ++E
Sbjct: 1122 QEVATLKTSITELQSQVSDLKAELENHLRQIQLKDGNIARLQTDFEEMSERCL----SME 1177

Query: 96   HDIXEVDPDTKDMLKMLD 43
              + E+D DTK   ++LD
Sbjct: 1178 VRLAELDEDTKQKQELLD 1195


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,696,985
Number of Sequences: 53049
Number of extensions: 300422
Number of successful extensions: 689
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1230182214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)