Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14f12
(415 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal pr... 137 3e-33
AC006605-8|AAK85439.2| 741|Caenorhabditis elegans Ligase protei... 31 0.44
AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory car... 28 2.3
AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synapt... 28 2.3
U00052-7|AAK21422.2| 232|Caenorhabditis elegans Fatty acid/reti... 28 3.1
Z81139-7|CAI46624.1| 358|Caenorhabditis elegans Hypothetical pr... 27 4.1
AC006648-9|AAF39858.2| 306|Caenorhabditis elegans Btb and math ... 27 4.1
Z35637-3|CAA84689.1| 244|Caenorhabditis elegans Hypothetical pr... 27 7.1
AF106577-10|AAC78189.1| 796|Caenorhabditis elegans Hypothetical... 27 7.1
AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical... 27 7.1
>AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 17 protein.
Length = 130
Score = 137 bits (331), Expect = 3e-33
Identities = 65/99 (65%), Positives = 77/99 (77%), Gaps = 3/99 (3%)
Frame = -2
Query: 324 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 145
IEKYYTR+T DF NKR+C+E+AII +KPLRNKIAG+ THLMRR+ VRGISIKLQEE
Sbjct: 17 IEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQEE 76
Query: 144 ERERRDNYVPEVSALEHD---IXEVDPDTKDMLKMLDFN 37
ERERRDNY+PE+S ++ +VD DT DMLK FN
Sbjct: 77 ERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115
>AC006605-8|AAK85439.2| 741|Caenorhabditis elegans Ligase protein 4
protein.
Length = 741
Score = 30.7 bits (66), Expect = 0.44
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = -3
Query: 242 SLLGIKLLDLPHI**GVSDT--RKCEESLSNFRKRSVRGVTTMSQKCL 105
SL GI++ L G S+T RKCEE L +F V+G+T ++ C+
Sbjct: 641 SLTGIEVAVLQ----GTSETIRRKCEEILKHFDATVVKGITPSTKLCI 684
>AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory
carrier membrane protein protein.
Length = 335
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 246 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 130
T L NK AG L R+ + + R ++++EEE +RR
Sbjct: 57 TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95
>AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synaptic
vesicle protein)homolog protein 1 protein.
Length = 335
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 246 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 130
T L NK AG L R+ + + R ++++EEE +RR
Sbjct: 57 TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95
>U00052-7|AAK21422.2| 232|Caenorhabditis elegans Fatty acid/retinol
binding proteinprotein 8 protein.
Length = 232
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -1
Query: 220 WICHTFNEASQTLASARNLYQTSGRGA 140
W CH FN A ++ A+ L Q A
Sbjct: 150 WACHIFNNAKSAVSGAKALLQDDSEAA 176
>Z81139-7|CAI46624.1| 358|Caenorhabditis elegans Hypothetical
protein W05H5.5 protein.
Length = 358
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 69 TKDMLKMLDFNNINGLQLTTAS 4
T D+ KML+ NN+NGL+L S
Sbjct: 107 TDDIGKMLNVNNLNGLELILLS 128
>AC006648-9|AAF39858.2| 306|Caenorhabditis elegans Btb and math
domain containingprotein 3 protein.
Length = 306
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -3
Query: 224 LLDLPHI**GVSDTRKCEESLSNFRKRSVRGVTTMSQKCLLSNM 93
+L L H+ TRKCEE L +F ++ ++ +++K L N+
Sbjct: 222 ILHLAHMYDMPFPTRKCEEFLIDFSEKPIKEKLKVAKKYQLENL 265
>Z35637-3|CAA84689.1| 244|Caenorhabditis elegans Hypothetical
protein C03C10.4 protein.
Length = 244
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = -2
Query: 204 LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALE 97
++ R +SQ+ +SI L+ E +ER+D+Y + ALE
Sbjct: 183 VLTRTMNSQLELMSI-LEHEVQERKDSYSDSMRALE 217
>AF106577-10|AAC78189.1| 796|Caenorhabditis elegans Hypothetical
protein F46F5.11 protein.
Length = 796
Score = 26.6 bits (56), Expect = 7.1
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = -2
Query: 174 RGISIKLQEEERERRDN----YVPEVSALEHDIXEVDPDTKDMLKMLDFNNINGLQL 16
RG ++ E+ + R D+ Y + +A++ + DPD + ++L ++ NGL L
Sbjct: 187 RGFPLEHIEKHKNRNDSQVLCYEMKRAAVQQGLVHHDPDVDAIYRLLHADSKNGLNL 243
>AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical
protein Y69A2AR.31 protein.
Length = 1219
Score = 26.6 bits (56), Expect = 7.1
Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Frame = -2
Query: 273 ICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEH 94
+ + ++IPT P I R + +S+ + ++Q E D PE +
Sbjct: 690 LAHQNSMIPTNPC---IESAMIEYSRIMGYSKPGLATNRVQSTVEEAVDPPEPEPAMRRT 746
Query: 93 DIXEVDPDT--KDMLKMLDFNNINGLQLTTASY 1
++ D+ +D ++ LD+N IN +TT ++
Sbjct: 747 ASTKIKRDSFQQDFIEFLDYNEINHQPITTVTF 779
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,547,590
Number of Sequences: 27780
Number of extensions: 154978
Number of successful extensions: 450
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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