Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14f11
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    33   0.025
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    31   0.077
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    31   0.10 
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    27   1.2  
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch...    26   2.2  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    26   2.9  
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C...    25   3.8  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    25   3.8  
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb...    25   5.0  
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||...    25   5.0  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    24   8.8  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    24   8.8  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    24   8.8  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    24   8.8  
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    24   8.8  

>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 32.7 bits (71), Expect = 0.025
 Identities = 20/67 (29%), Positives = 34/67 (50%)
 Frame = -1

Query: 232 NKIDKELIDSQNARLFIIQKYDELCNKINFLTELDSTFNGFRRDVKSIEQQVCELSQRVD 53
           +K+  EL  SQ +R     K DE  +K+N L+EL+S  +    ++  I  +   +    D
Sbjct: 301 SKVALELQSSQLSRQIEFSKKDE-SSKLNILSELESKISEKENELSEILPKYNAIVSEAD 359

Query: 52  SIEKRII 32
            + KRI+
Sbjct: 360 DLNKRIM 366


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 31.1 bits (67), Expect = 0.077
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = -1

Query: 271 IESKFDEIKIGIVNKIDKELIDSQNARLFIIQKYDELCNKINFLTELDSTFNGFRRDVKS 92
           +++  + +K    ++I+K   +  N    I+QK DEL   I   +EL+   N      +S
Sbjct: 117 LQTDRENLKHQFEDQIEKLNSEISNQNSLILQKKDELEKSIQRCSELEEKINSL-ESAQS 175

Query: 91  IEQQV 77
           IEQ+V
Sbjct: 176 IEQEV 180


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 30.7 bits (66), Expect = 0.10
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -1

Query: 151 INFLTELDSTFNGFRRDVKSIEQQVCELSQRVDSIEKRIICKECPSL 11
           ++ LT  DS+FNGF RD +     +  +  R  ++    + K+  S+
Sbjct: 491 VHSLTRSDSSFNGFERDTRRRSSDIARIKNREINLPSSSLSKQRNSM 537


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = -1

Query: 229 KIDKELIDSQNARLFIIQKYDELCNKINFLTELDSTFNGFRRDVKSIEQQVCELSQRVDS 50
           K+D+E I   N R  I+ +     N I   T   +  N +R  ++ I  ++C + +  D 
Sbjct: 663 KVDRERIGFSNKRAAILLRG---ANVIGMTT---TGLNKYRDILERINPKICFIEEAADV 716

Query: 49  IEKRIICKECPSL 11
           +E  II    PSL
Sbjct: 717 LEGPIIPAVFPSL 729


>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -1

Query: 184 IIQKYDELCNKINFLTELDSTFNGFRRDVKSIEQQVCELSQRVDSIEKR 38
           I  +Y E      F  + DST    R  V+ +  + C L + ++SI K+
Sbjct: 123 IFARYSEWKAYDPFFQQKDSTLKSSRAAVEELAGRYCLLEEELNSIAKK 171


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 19/62 (30%), Positives = 25/62 (40%)
 Frame = -1

Query: 409 KCNKNSKI*NCFVTIQQNIKMSITNKVADKEMLKVXXXXXXXXXXTIESKFDEIKIGIVN 230
           KC+KN    NCFV  ++ I   I      K   K            +ES   +IK+  V 
Sbjct: 35  KCDKNRPCHNCFVAKRECI---IAGDNRKKRHTKTYVEALESQLANMESTLAKIKVAPVE 91

Query: 229 KI 224
           KI
Sbjct: 92  KI 93


>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = -1

Query: 226 IDKELIDSQNARLFIIQKYDELCNKINFLT---ELDSTFNGFRRDVKSIEQQVCE 71
           I K+L  SQ+    IIQK+D   NK NF     E+  TFN        +   +C+
Sbjct: 253 IAKQLAISQDVAKEIIQKFD---NKTNFTVANGEIFLTFNALDDVSPEMHSDLCQ 304


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 14/63 (22%), Positives = 29/63 (46%)
 Frame = -1

Query: 235 VNKIDKELIDSQNARLFIIQKYDELCNKINFLTELDSTFNGFRRDVKSIEQQVCELSQRV 56
           + K+ K+ +    A +    KY  LC K+N+     +   G     K +E+   +L++  
Sbjct: 132 IEKVHKDKLSKHQALVKAQDKYHYLCKKVNYYVSQQNMLFG-----KELEKNNAKLNKTQ 186

Query: 55  DSI 47
           ++I
Sbjct: 187 NAI 189


>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 323

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 14/80 (17%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
 Frame = -1

Query: 271 IESKFDEIKIGIVNKIDKELIDSQNARLFIIQKYDELCNKINF-LTELDSTFNGFRRDVK 95
           ++++   +K G + ++  E+++ +   + +  + D L  K       ++  FN   +   
Sbjct: 140 VQNEMTSMK-GEMAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRFN 198

Query: 94  SIEQQVCELSQRVDSIEKRI 35
           SI+++   + QR+DS+++++
Sbjct: 199 SIDRRFDSMEQRLDSMDQKM 218


>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 14/80 (17%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
 Frame = -1

Query: 271 IESKFDEIKIGIVNKIDKELIDSQNARLFIIQKYDELCNKINF-LTELDSTFNGFRRDVK 95
           ++++   +K G + ++  E+++ +   + +  + D L  K       ++  FN   +   
Sbjct: 140 VQNEMTSMK-GEMAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRFN 198

Query: 94  SIEQQVCELSQRVDSIEKRI 35
           SI+++   + QR+DS+++++
Sbjct: 199 SIDRRFDSMEQRLDSMDQKM 218


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +2

Query: 20   ALFTDNPLLYAVDALRELANLLLDGFHVSPESVER*VEFGQKINLVT 160
            A FTD  L + VD + +  NLLL+  + + E+ ++ V  G  ++L T
Sbjct: 1884 ASFTDAALRFIVDHIGQQTNLLLEIVNYNVEN-QQYVVSGNLLSLST 1929


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -2

Query: 246 KSESLIKSIKN*SILKTLDCLS-FKSTMSFVTRLI 145
           K  S +  +++ S+L+ ++ L   KS+MSFVTR I
Sbjct: 80  KDVSSLSRLRHPSLLQVVEPLEESKSSMSFVTRRI 114


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -2

Query: 408 NATKIR-KSKIVSLQYNKTLKC 346
           NA K R  S  +SLQ+ KTL+C
Sbjct: 169 NACKDRLSSSAISLQWKKTLEC 190


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 303 LTFNISLSATLFVIDILMFCCIVTK 377
           +  N  L+ T + ++IL  C IVTK
Sbjct: 856 ILLNYMLNRTRYCLEILSACAIVTK 880


>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 127 STFNGFRRDVKSIEQQVCELSQRVDSIEKRIICKECPSLTS 5
           +T+N  +   +S+ Q V E SQ  +S+        CP  T+
Sbjct: 22  NTYNFTQIQKRSVNQAVLESSQDTNSVGGEASSTACPLFTT 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,365,639
Number of Sequences: 5004
Number of extensions: 21225
Number of successful extensions: 85
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)