Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14f09
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1182 + 10150911-10150979,10150984-10151457                       28   5.2  
09_04_0104 + 14626756-14626828,14627658-14627791,14628544-146285...    27   9.2  
06_01_0007 + 130582-131544,132187-132264,132615-132732,133228-13...    27   9.2  

>06_01_1182 + 10150911-10150979,10150984-10151457
          Length = 180

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +1

Query: 364 WNQFRWVSLRVYSFFCKRIDLFVDSLMFHFHIDSCKPVSFLLFLSD 501
           W+  RWV       F    DL + +L    H DS +  SF   L D
Sbjct: 71  WSSIRWVFRDATLLFIPCNDLAIAALFLFSHADSVESASFHFRLHD 116


>09_04_0104 +
          14626756-14626828,14627658-14627791,14628544-14628593,
          14628684-14628776,14628897-14628988,14629279-14629385,
          14631536-14631712,14631808-14632476
          Length = 464

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 78 IRNKWLNWIA*GLFGAIV 25
          ++N WL W   GLFGAI+
Sbjct: 32 LQNGWLLWAGVGLFGAII 49


>06_01_0007 +
           130582-131544,132187-132264,132615-132732,133228-133271,
           133389-133448,133536-133588,133671-133837,133963-134167,
           134989-135046,135225-135281,135363-135608,135938-136002,
           136090-136158,136238-136331,136467-136607,137159-137304,
           137452-138110,138222-138335,138406-138560
          Length = 1163

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -1

Query: 576 LLVKNCKRKGLSKMESNDFRPYFILIRKEEEKGDRFARINMEVKHQAID 430
           ++ K  + KGLS   + D R   +  RK  E GD      + + HQ+ D
Sbjct: 639 IIRKKHEMKGLSMDTNTDLRWRLLAGRKASEDGDLLLSAAVPIIHQSFD 687


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,017,269
Number of Sequences: 37544
Number of extensions: 285290
Number of successful extensions: 623
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)