Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14f08
         (475 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0612 + 26117306-26118045,26118151-26118680,26119247-261192...    27   5.8  
10_01_0354 - 3887790-3890204                                           27   7.7  

>03_05_0612 +
           26117306-26118045,26118151-26118680,26119247-26119278,
           26119910-26121175
          Length = 855

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 21  GTCYGFKVE*RNISHSTLLLKHNHKTISYPKGTN 122
           GT +  +V  + +S+  ++LKHN KT+   +G N
Sbjct: 657 GTVHPQRVVIKILSYVDMILKHNTKTVDGQRGEN 690


>10_01_0354 - 3887790-3890204
          Length = 804

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 322 FLVSLFGHNLFKDFTITFD*PVSSCFL 402
           +++ L G +LF+D  ITFD  +  C L
Sbjct: 471 YIIELIGSSLFQDSLITFDGSMPHCKL 497


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,972,004
Number of Sequences: 37544
Number of extensions: 193290
Number of successful extensions: 415
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)