Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14f08
         (475 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT022686-1|AAY55102.1|   78|Drosophila melanogaster IP07169p pro...    84   1e-16
AE014297-3458|AAF56235.2|  144|Drosophila melanogaster CG18428-P...    84   1e-16

>BT022686-1|AAY55102.1|   78|Drosophila melanogaster IP07169p
           protein.
          Length = 78

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 39/69 (56%), Positives = 54/69 (78%)
 Frame = -2

Query: 474 SKAMXPMSKEEWEKXQSIIRRVLDEETGRYRLIKGDGEVLEEIVSKERHKEINRQATQAD 295
           SK+  P + EE+++ QS IR+ +D  TGR RLIKGD EVLEEIV+KERH EIN++AT+ D
Sbjct: 3   SKSHAPETPEEYQRRQSQIRKEVDPVTGRVRLIKGDSEVLEEIVTKERHLEINKKATRGD 62

Query: 294 GALFQAQTL 268
           G  ++A++L
Sbjct: 63  GEFYEARSL 71


>AE014297-3458|AAF56235.2|  144|Drosophila melanogaster CG18428-PA
           protein.
          Length = 144

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 39/69 (56%), Positives = 54/69 (78%)
 Frame = -2

Query: 474 SKAMXPMSKEEWEKXQSIIRRVLDEETGRYRLIKGDGEVLEEIVSKERHKEINRQATQAD 295
           SK+  P + EE+++ QS IR+ +D  TGR RLIKGD EVLEEIV+KERH EIN++AT+ D
Sbjct: 69  SKSHAPETPEEYQRRQSQIRKEVDPVTGRVRLIKGDSEVLEEIVTKERHLEINKKATRGD 128

Query: 294 GALFQAQTL 268
           G  ++A++L
Sbjct: 129 GEFYEARSL 137


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,917,622
Number of Sequences: 53049
Number of extensions: 346547
Number of successful extensions: 760
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1622204766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)