Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14f08
         (475 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50308-5|AAG24033.2|  284|Caenorhabditis elegans Seven tm recept...    31   0.32 
Z80223-4|CAB02318.1|  229|Caenorhabditis elegans Hypothetical pr...    27   5.2  
U61953-17|AAK82912.1|  278|Caenorhabditis elegans Hypothetical p...    27   6.9  
AF292053-1|AAG41149.1|  278|Caenorhabditis elegans 4F223 protein.      27   6.9  
AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical...    27   9.1  

>U50308-5|AAG24033.2|  284|Caenorhabditis elegans Seven tm receptor
           protein 94 protein.
          Length = 284

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -3

Query: 233 LRVSFLILSI*YLGFFAAFIRNCLVMKMIGTK 138
           +R+ F  +S  YLGFF AFI N  ++ +I T+
Sbjct: 1   MRIPFYTVSAEYLGFFVAFITNVTLIYLIITR 32


>Z80223-4|CAB02318.1|  229|Caenorhabditis elegans Hypothetical
           protein F26D10.11 protein.
          Length = 229

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +2

Query: 302 CVACLLISLCLS----LDTISSRTSPSPLINLYLPVSSSNTLLIILXFFSHS 445
           C+ CL  +L L     +  +SS T P+ + N   PV     + +   F+SHS
Sbjct: 172 CLCCLGFALALKKPPKIPELSSLTGPTVISNTIQPVPRPRKMSLQDSFYSHS 223


>U61953-17|AAK82912.1|  278|Caenorhabditis elegans Hypothetical
           protein R08C7.12 protein.
          Length = 278

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 335 SLDTISSRTSPSPLINLYLPVSS 403
           S+D+ SSR  PSP+ N   P SS
Sbjct: 4   SIDSSSSRMLPSPITNFVTPSSS 26


>AF292053-1|AAG41149.1|  278|Caenorhabditis elegans 4F223 protein.
          Length = 278

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 335 SLDTISSRTSPSPLINLYLPVSS 403
           S+D+ SSR  PSP+ N   P SS
Sbjct: 4   SIDSSSSRMLPSPITNFVTPSSS 26


>AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical
           protein K07H8.10 protein.
          Length = 798

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -2

Query: 459 PMSKEEWEKXQSIIRRVLDEETGRYRLIKGDGEVLEEIVSKERHKEINRQA 307
           P  K +  + Q  ++R LDE T   + +K DG   + I+S+E  +  +R +
Sbjct: 505 PAVKPKVTEKQGGVKRKLDEPTVASKQVKSDG---KSIISEEERRRQDRDS 552


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,967,092
Number of Sequences: 27780
Number of extensions: 190057
Number of successful extensions: 528
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)