Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14f08
         (475 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   3.8  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   5.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   5.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   5.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.9  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +3

Query: 45  E*RNISHSTLLLKHNHKTISYPKGTNLKIY 134
           E RN+   T+++ +N +T+S     + ++Y
Sbjct: 406 ELRNLGRKTIMVNYNPETVSTDYDMSDRLY 435


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -2

Query: 228 CIIPYFKYLILRIFC 184
           C +P+F   ++R FC
Sbjct: 21  CWLPFFTMYLVRAFC 35


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 453 SKEEWEKXQSIIRRVLDEETGRYRL 379
           +KE+ E+ +  +R+ LD +TG   L
Sbjct: 483 NKEDSEEFRQRLRKELDSKTGGVNL 507


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -2

Query: 228 CIIPYFKYLILRIFC 184
           C +P+F   ++R FC
Sbjct: 469 CWLPFFTMYLVRAFC 483


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 329 CLSLDTISSRTSPSPLINLYLP 394
           CL +D +  R     LI +Y+P
Sbjct: 230 CLKVDLLFKREFSYYLIQIYIP 251


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 329 CLSLDTISSRTSPSPLINLYLP 394
           CL +D +  R     LI +Y+P
Sbjct: 230 CLKVDLLFKREFSYYLIQIYIP 251


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 143 TKNINF*VGSFRVADSFM 90
           TKN+ F VG  RVA+  M
Sbjct: 24  TKNMVFVVGLERVAEELM 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,703
Number of Sequences: 438
Number of extensions: 2080
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)