Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14f06
(681 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 341 6e-95
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 161 8e-41
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 156 3e-39
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 106 3e-24
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 30 0.36
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.1
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 28 1.4
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 5.8
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 26 5.8
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.7
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 7.7
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 7.7
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 341 bits (838), Expect = 6e-95
Identities = 153/196 (78%), Positives = 178/196 (90%)
Frame = -2
Query: 680 ATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFIPGFAPLTSRGSQQYRALTVPELT 501
A M+GVTT RFPG+LN+DLRKLAVNMVPFPRLHFF+ GFAPL + GS ++A++VPELT
Sbjct: 231 AVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELT 290
Query: 500 QQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPNNVK 321
QQMFDA NMM A DPRHGRYLTVAA+FRG++SMKEVDEQ+ ++Q KNS+YFVEWIP+NV
Sbjct: 291 QQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVL 350
Query: 320 TAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTE 141
AVC +PP+ LKMSATFIGNST+IQE+F+R+ +QF+AMFRRKAFLHWYTGEGMDEMEFTE
Sbjct: 351 KAVCSVPPKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTE 410
Query: 140 AESNMNDLVSEYQQYQ 93
AESNMNDLVSEYQQYQ
Sbjct: 411 AESNMNDLVSEYQQYQ 426
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 161 bits (391), Expect = 8e-41
Identities = 72/200 (36%), Positives = 117/200 (58%), Gaps = 8/200 (4%)
Frame = -2
Query: 674 MSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFIPGFAPLTSRGSQQYRALTVPELTQQ 495
+S +T LRF G LN DL + N+VP+PR+HF + +AP+ S + + +V E+T Q
Sbjct: 235 VSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQ 294
Query: 494 MFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPNNVKTA 315
F+ N M CDPR GRY+ ++RG + ++V + I+ K + FV+W P K
Sbjct: 295 CFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIG 354
Query: 314 VCDIPPRGLKMS--------ATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMD 159
+CD PP+ ++ S + N+T+I E + R+ +F M+ ++AF+HWY GEGM+
Sbjct: 355 ICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGME 414
Query: 158 EMEFTEAESNMNDLVSEYQQ 99
E EF+EA ++ L +Y++
Sbjct: 415 EGEFSEAREDLAALERDYEE 434
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 156 bits (378), Expect = 3e-39
Identities = 68/200 (34%), Positives = 117/200 (58%), Gaps = 8/200 (4%)
Frame = -2
Query: 674 MSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFIPGFAPLTSRGSQQYRALTVPELTQQ 495
+S +T LRF G LN DL + N+VP+PR+HF + ++P+ S + + +V E+T Q
Sbjct: 239 VSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQ 298
Query: 494 MFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPNNVKTA 315
F+ N M CDPR GRY+ ++RG + ++V + +I+++ + FV+W P K
Sbjct: 299 CFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIG 358
Query: 314 VCDIPPR--------GLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMD 159
+C PP+ + + + N+T+I E + R+ +F M+ ++AF+HWY GEGM+
Sbjct: 359 ICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGME 418
Query: 158 EMEFTEAESNMNDLVSEYQQ 99
E EF+EA ++ L +Y++
Sbjct: 419 EGEFSEAREDLAALERDYEE 438
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 106 bits (255), Expect = 3e-24
Identities = 55/201 (27%), Positives = 111/201 (55%), Gaps = 10/201 (4%)
Frame = -2
Query: 674 MSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFIPGFAPLTSRGSQQYRAL---TVPEL 504
MS TT LR+PG +N DL + +++P PR HF + + P T++ ++ +A+ TV ++
Sbjct: 236 MSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDV 295
Query: 503 TQQMFDAKNMMAACDP-RHGRYLTVAAVFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPNN 327
+++ KN M + +P + ++++ + +G +V + ++ I+ + + F+ W P +
Sbjct: 296 MRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPAS 355
Query: 326 VKTAVCDIPP---RGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDE 156
++ A+ P ++S + N T+I LFKR +Q+ + +R AFL Y E + E
Sbjct: 356 IQVALSKKSPYIKTNHRVSGLMLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFE 415
Query: 155 MEFTEAESNMN---DLVSEYQ 102
+ E +S+ + DL++EY+
Sbjct: 416 DDLNEFDSSRDVVADLINEYE 436
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 29.9 bits (64), Expect = 0.36
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -2
Query: 425 VFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIG--NSTA 252
V+ + ++ + + +MNI+ N S W+PN + +P G K+S I N +
Sbjct: 343 VYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVSEMLISMLNICS 402
Query: 251 IQELFK 234
+EL++
Sbjct: 403 KEELYE 408
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.3 bits (60), Expect = 1.1
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +2
Query: 479 SSRQTSAASTPAPLAHGTADSRVTSEARNPV*KSATVGTAPCSLLACADLHSTDQGTVDK 658
S+ TSA+STP A+ T + V+S A P +++V P S ++ L S + T
Sbjct: 380 STSATSASSTPLTSANSTTSTSVSSTA--PSYNTSSV--LPTSSVSSTPLSSANSTTATS 435
Query: 659 SSRLTLS 679
+S LS
Sbjct: 436 ASSTPLS 442
Score = 27.1 bits (57), Expect = 2.5
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = +2
Query: 479 SSRQTSAASTPAPLAHGTADSRVTSEARNPV*KSATVGTAPCSLLACADLHSTDQGTVDK 658
S+ TSA+STP A+ T + V+S A P +++V P S ++ L S + T
Sbjct: 494 STSATSASSTPLTSANSTTSTSVSSTA--PSYNTSSV--LPTSSVSSTPLSSANSTTATS 549
Query: 659 SSRLTLS 679
+S L+
Sbjct: 550 ASSTPLT 556
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 263 NSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDE 156
NS+ IQ L K ++ T +R ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.8 bits (54), Expect = 5.8
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -2
Query: 269 IGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 93
+ N + L+K + E+F+ +F RK L WY G+ E + N+N SE + Q
Sbjct: 1703 LNNPHLLFTLYKLL-ERFSLIFLRKCALLWYCRYGVS----FETQPNLNFQNSELSRLQ 1756
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -2
Query: 446 RYLTVAAVFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPN 330
+Y+ +VF G + NI N S EW+PN
Sbjct: 29 QYIPTISVFEGSLIDNRDTLSYFNISNLEPSERSEWLPN 67
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 25.4 bits (53), Expect = 7.7
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +2
Query: 422 RQRPQSGSDRGADHKPPSCSSRQTSAASTPAPLAHGTADSRVTSEARNPV 571
R+ SGS G + PPS + + S+ + A LA T R T E P+
Sbjct: 124 RRLRTSGSSTGLSNAPPSANVSKASSNLSLASLAK-TQPERATPEVCVPL 172
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 7.7
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 89 HLGTVGTPIPGRSCL 133
HLG+ G P+P R+C+
Sbjct: 25 HLGSWGNPMPNRACV 39
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 470 PSCSSRQTSAASTPAPLAHGTA-DSRVTS 553
P SS TS +TP P +GT+ ++ VTS
Sbjct: 255 PPASSASTSPRNTPTPSNNGTSINANVTS 283
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,401,267
Number of Sequences: 5004
Number of extensions: 43925
Number of successful extensions: 156
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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