Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14f05
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.41
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 28 1.2
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 1.2
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 2.2
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 27 2.9
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 5.0
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.0
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 25 8.8
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 25 8.8
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 25 8.8
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.9 bits (64), Expect = 0.41
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Frame = +1
Query: 334 LASGSCIPSSVLINISSIDSVPV-DSFTTFRFS-------LTSLLYSFILIWSPFTVSSF 489
++S S I S I SSI ++P+ S +T+ S L S S I+ SP SS
Sbjct: 637 ISSSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSS 696
Query: 490 TGISSKPLMQSALPAVMNDLKFSLLTITS 576
+ I S + S A ++++ S L++T+
Sbjct: 697 SPIPSSSSLVSTYSASLSNITHSSLSLTA 725
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 212 WKCVDGSGKEPRCRASVLTNSSRVVRR 132
W V G K P+CRA L SR RR
Sbjct: 480 WNTVPGHHKNPKCRAKKLVVESRNGRR 506
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = -3
Query: 491 VNEDTVKGDQINMNEYNNEVSENLNVVKESTGT---ESMDDMLINTDEGMHEPEANDGTK 321
+N GD+ + + E S N N+VK + GT + MD+ +++ D+ + E + +
Sbjct: 105 INPQNTIGDK---SAHTEEESSNDNLVKITAGTIISDIMDEPVVDEDDKLSEEDLSKEDL 161
Query: 320 EPTLQ 306
E TL+
Sbjct: 162 ETTLK 166
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/49 (22%), Positives = 26/49 (53%)
Frame = +3
Query: 369 NQHIIHRFCACRFFYYIQVFTDFIIVFVHIDLVSFYCIFIYRHIVQASD 515
+ +++ FC FF+Y +F+ F +F + F+ + ++H++ D
Sbjct: 101 DSNVVPFFC---FFFYFSLFSFFSFLFTSLHFNFFFRLCRHKHLLDIPD 146
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = -3
Query: 611 VLQAILQYIYTGEVIVSKENFKSF 540
V+ I Q+ +TG++I++KEN K+F
Sbjct: 405 VISGIKQF-HTGDIIINKENSKNF 427
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +1
Query: 361 SVLINISSIDSVPVDSFTTFRFSLTSLLYSFILIW 465
++L N+++++ D T RF+ T + +++L W
Sbjct: 175 TILSNMNAVEETVKDGLKTARFAETCRMSTYLLAW 209
>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 459 DLVSFYCIFIYRHIVQASDAECSPSCHE*LKVLLAD 566
+L+S+YC Y+H+++ A+ + H L L +D
Sbjct: 266 NLLSYYCSHNYQHLIENESADIN-IAHRPLTTLFSD 300
>SPAC11E3.06 |map1||MADS-box transcription factor
Map1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 419 NVVKESTGTESMDDMLINTDEGMHEPEANDGTKEPTLQYSLSNHG 285
NVVK G + + + LIN +E +A+ K+ + Q S S G
Sbjct: 81 NVVKSPEGQKLITESLINATTDQNESQASQ-AKQSSAQLSDSESG 124
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = -3
Query: 458 NMNEYNNEVS-ENLNVVKESTGT----ESMDDMLINTDEGMHEPEANDGTKEP 315
NMN ++N S EN+ E+ E MD+ + + EG E G +EP
Sbjct: 361 NMNTWDNTPSVENVESANENVNNHNADEQMDEKIKSLVEGNSAYEIEKGAQEP 413
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 25.4 bits (53), Expect = 8.8
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +1
Query: 463 WSPFTVSSFTGISSKPLM 516
W P +++ F G+SS PL+
Sbjct: 216 WDPASIADFIGVSSIPLL 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,211,036
Number of Sequences: 5004
Number of extensions: 69715
Number of successful extensions: 226
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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