Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14f05
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1036 + 9021395-9021658,9024214-9024690 40 0.002
08_02_1251 - 25592537-25593380,25593589-25593893 38 0.011
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 36 0.026
08_01_0200 + 1632883-1633913,1634620-1634677 36 0.046
08_01_0811 - 7872886-7873261,7873446-7873861,7874253-7874262,787... 35 0.060
10_08_0052 - 14491990-14493108 34 0.11
08_01_0801 - 7750548-7751708 34 0.14
06_02_0131 + 12161268-12161781,12162123-12162867,12162950-121629... 34 0.14
10_08_0051 + 14489255-14490403 33 0.18
08_01_0199 + 1628158-1629192 33 0.24
08_02_1308 - 26024491-26025405 33 0.32
11_06_0415 + 23306555-23306794,23306842-23307684 32 0.56
10_08_0053 - 14496494-14497240,14497418-14497501,14497676-14498152 32 0.56
08_02_1121 + 24457413-24457528,24458395-24458552,24458927-244590... 31 0.74
08_01_0203 + 1639993-1641141 31 0.74
01_07_0176 - 41733845-41734834,41736058-41736588 31 0.74
01_06_0847 + 32411521-32411619,32411737-32411851,32412292-324123... 31 0.74
12_01_0252 + 1868670-1869200,1870167-1871120 31 1.3
11_01_0252 + 1934505-1935032,1936001-1936957 31 1.3
06_03_1063 - 27297755-27298748,27298791-27298834 31 1.3
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778... 30 1.7
10_08_0129 - 15025076-15025858,15025951-15026283 30 1.7
10_08_0122 - 14982676-14983043,14983957-14985145 30 1.7
08_01_0657 + 5674907-5674993,5675615-5676583 30 1.7
07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935... 30 1.7
06_03_1104 + 27623632-27623795,27624052-27624175,27624316-276248... 30 1.7
10_08_0054 + 14501357-14502478 30 2.3
04_03_0095 + 11114971-11115939,11115954-11116556 29 3.0
01_07_0014 - 40455673-40455723,40455815-40455892,40455987-404560... 29 3.0
09_04_0680 - 19401891-19402049,19402556-19402928,19403385-194034... 28 6.9
08_01_0802 - 7754561-7755628 28 6.9
02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812 28 6.9
01_05_0409 - 21896478-21897005,21897098-21897292,21897405-218975... 28 6.9
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 28 9.2
05_01_0019 - 129767-129931,130078-130257,130491-130728,130833-13... 28 9.2
04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420... 28 9.2
>07_01_1036 + 9021395-9021658,9024214-9024690
Length = 246
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = -3
Query: 752 DMTLAADGHLVKVHRMVLCLVSPYIKTLIASV--DCPHPVIFLNDISYEVLQAILQYIYT 579
D D V HR++L SP + ++ + + +I + D+SY+VL+A + Y+YT
Sbjct: 71 DAPARPDTPAVPAHRVILASRSPVFRAMLENEMEESRSGIIKIYDVSYDVLRAFVHYMYT 130
Query: 578 GEVIVSKE 555
E ++ ++
Sbjct: 131 AEALLDEQ 138
>08_02_1251 - 25592537-25593380,25593589-25593893
Length = 382
Score = 37.5 bits (83), Expect = 0.011
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -3
Query: 752 DMTLAADGHLVKVHRMVLCLVSPYIKTLIAS--VDCPHPVIFLNDISYEVLQAILQYIYT 579
D+ G HR +L + SP K L+ S + I LNDI + +A+L ++YT
Sbjct: 225 DVFFFVGGETFHAHRALLAVCSPVFKALLLSSTAEAAACSITLNDIKPAMFEALLHFMYT 284
Query: 578 GEVI 567
G+ +
Sbjct: 285 GDFL 288
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 36.3 bits (80), Expect = 0.026
Identities = 21/69 (30%), Positives = 36/69 (52%)
Frame = -3
Query: 743 LAADGHLVKVHRMVLCLVSPYIKTLIASVDCPHPVIFLNDISYEVLQAILQYIYTGEVIV 564
+ ++ +V H++VL + L+ S P I L +SY VL ++L+YIYTG +
Sbjct: 215 VGSERKVVPAHKVVLGSCGDFPFNLMMS----RPAIELPSVSYPVLHSLLEYIYTGSTQI 270
Query: 563 SKENFKSFM 537
S+ S +
Sbjct: 271 SEWQLVSLL 279
>08_01_0200 + 1632883-1633913,1634620-1634677
Length = 362
Score = 35.5 bits (78), Expect = 0.046
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = -3
Query: 752 DMTLAADGHLVKVHRMVLCLVSPYIKT----LIASVDCPHPVIFLNDISYEVLQAILQYI 585
D+T A G HR++L SP K + D H VI + D+ V +A+L +I
Sbjct: 179 DVTFAVQGETFTAHRLMLAARSPVFKAELYGAMKEKDADH-VIAIVDVQPAVFKALLHFI 237
Query: 584 YTGEV 570
YT ++
Sbjct: 238 YTDDM 242
>08_01_0811 -
7872886-7873261,7873446-7873861,7874253-7874262,
7874370-7875334
Length = 588
Score = 35.1 bits (77), Expect = 0.060
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = -3
Query: 752 DMTLAADGHLVKVHRMVLCLVSPYIKTLI----ASVDCPHPVIFLNDISYEVLQAILQYI 585
D+T + DG L HR++L + SP + + I ++D+ +V A+L+YI
Sbjct: 176 DVTFSVDGELFAAHRVILAMRSPVFRAAVYGEMRESGRGGGPIAIDDMRPDVFDALLRYI 235
Query: 584 YT 579
YT
Sbjct: 236 YT 237
>10_08_0052 - 14491990-14493108
Length = 372
Score = 34.3 bits (75), Expect = 0.11
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Frame = -3
Query: 752 DMTLAADGHLVKVHRMVLCLVSPYIKT-----LIASVDCPHPVIFLNDISYEVLQAILQY 588
D+T G V+ HR +L SP K + S + V+ ++D+ EV +A+L +
Sbjct: 197 DVTFRVAGEDVRAHRYILAARSPVFKAELFGQMKESSSSSNTVMNVDDMEAEVFRALLAF 256
Query: 587 IYTGEVIVSKENFK 546
IYT + +K K
Sbjct: 257 IYTDALPETKTKAK 270
>08_01_0801 - 7750548-7751708
Length = 386
Score = 33.9 bits (74), Expect = 0.14
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = -3
Query: 752 DMTLAADGHLVKVHRMVLCLVSPYIKTLIASV--DCPHPVIFLNDISYEVLQAILQYIYT 579
D+T G VH++VL + SP K + + + I + D+ V +A+LQ+IYT
Sbjct: 202 DVTFDVAGEPFSVHKLVLAMRSPVFKAELCGLLREPGTQPITIVDMQPAVFRALLQFIYT 261
Query: 578 GEVIVSK 558
+ V++
Sbjct: 262 DQFPVTR 268
>06_02_0131 +
12161268-12161781,12162123-12162867,12162950-12162986,
12163083-12163216,12163298-12163625
Length = 585
Score = 33.9 bits (74), Expect = 0.14
Identities = 19/96 (19%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Frame = -3
Query: 752 DMTLAADGHLVKVHRMVLCLVSPYIKTLIAS--VDCPHPVIFLNDISYEVLQAILQYIYT 579
D+T DG ++ HR++LC S + + + D +S+ L +++ + Y+
Sbjct: 188 DITFYVDGKPIEAHRVILCARSSFFRRKFNTDWKDRKEVRFSSQKLSFGALYSLVHFFYS 247
Query: 578 GEVIVSKENFKSFMTAGRALCIRGLDDMPVNEDTVK 471
+ V ++ ++ A + GL + + E T++
Sbjct: 248 DRLEVDVDDMENLARACKVCKCEGLQKILIKEATLQ 283
>10_08_0051 + 14489255-14490403
Length = 382
Score = 33.5 bits (73), Expect = 0.18
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = -3
Query: 752 DMTLAADGHLVKVHRMVLCLVSPYIKT----LIASVDCPHPVIFLNDISYEVLQAILQYI 585
D+T G V+ HR +L SP K + + V+ ++D+ EV +A+L +I
Sbjct: 201 DVTFHVAGEEVRAHRYILAARSPVFKAELFGQMKESSSSNTVVNVDDMEAEVFRALLVFI 260
Query: 584 YTGEVIVSK 558
YT + +K
Sbjct: 261 YTNALPETK 269
>08_01_0199 + 1628158-1629192
Length = 344
Score = 33.1 bits (72), Expect = 0.24
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = -3
Query: 752 DMTLAADGHLVKVHRMVLCLVSP-YIKTLIASV-DCPHPVIFLNDISYEVLQAILQYIYT 579
D+T G HR+VL + SP ++ +L S+ + P I ++D+ EV A+L+++Y+
Sbjct: 200 DVTFDVRGQPFAAHRIVLAMRSPVFMASLYGSMREHRAPRIAVDDMEPEVFDALLRFVYS 259
>08_02_1308 - 26024491-26025405
Length = 304
Score = 32.7 bits (71), Expect = 0.32
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = -3
Query: 752 DMTLAADGHLVKVHRMVLCLVSPYIKT-LIASV-DCPHPVIFLNDISYEVLQAILQYIYT 579
D++ DG HR VL SP + L+ S+ + I L+DI +A+L++IYT
Sbjct: 129 DVSFLVDGETFPAHRAVLAARSPVFRAELLGSMAESKMSSITLHDIEPLTFRALLRFIYT 188
Query: 578 GEV 570
++
Sbjct: 189 DKL 191
>11_06_0415 + 23306555-23306794,23306842-23307684
Length = 360
Score = 31.9 bits (69), Expect = 0.56
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = -3
Query: 752 DMTLAADGHLVKVHRMVLCLVSP-YIKTLIASV---DCPHPVIFLNDISYEVLQAILQYI 585
D+T GH HR VL SP ++ L+ + D V+ + D+ +A+L +I
Sbjct: 198 DVTFDVAGHKFAAHRCVLAARSPVFMAELLGPMKEEDTESHVVAIRDMDARAFKAMLHFI 257
Query: 584 YT 579
YT
Sbjct: 258 YT 259
>10_08_0053 - 14496494-14497240,14497418-14497501,14497676-14498152
Length = 435
Score = 31.9 bits (69), Expect = 0.56
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = -3
Query: 752 DMTLAADGHLVKVHRMVLCLVSPYIKT----LIASVDCPHPVIFLNDISYEVLQAILQYI 585
D+T G V HR +L SP K + + ++ ++D+ EV +A+L +I
Sbjct: 261 DVTFHVAGEEVPAHRYILAARSPVFKAELFGQMKESSSSNTIVKVDDMEAEVFRALLAFI 320
Query: 584 YT 579
YT
Sbjct: 321 YT 322
>08_02_1121 +
24457413-24457528,24458395-24458552,24458927-24459042,
24459735-24460400
Length = 351
Score = 31.5 bits (68), Expect = 0.74
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -3
Query: 752 DMTLAADGHLVKVHRMVLCLVSPYIKTLIAS--VDCPHPVIFLNDISYEVLQAILQYIY 582
D+T+ A + HR +L SP +++ + + + ++D+S E QA L YIY
Sbjct: 187 DITINATDGSIMAHRAILASRSPVFRSMFSHDLKEKELSTVDISDMSLEACQAFLNYIY 245
>08_01_0203 + 1639993-1641141
Length = 382
Score = 31.5 bits (68), Expect = 0.74
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = -3
Query: 752 DMTLAADGHLVKVHRMVLCLVSPYIKTLI-----ASVDCPHPVIFLNDISYEVLQAILQY 588
D+TL G HR VL + SP K + S D + ++ + V +A+L +
Sbjct: 193 DVTLVVRGEEFAAHRAVLAMRSPVFKAALYGPMKESTDANAGRVAIDSVEPAVFRALLHF 252
Query: 587 IYT 579
IYT
Sbjct: 253 IYT 255
>01_07_0176 - 41733845-41734834,41736058-41736588
Length = 506
Score = 31.5 bits (68), Expect = 0.74
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -3
Query: 665 ASVDCPHPVIFLNDISYEVLQAILQYIYTGEV 570
A+ P VI ++ +SYEV +LQ++Y+G+V
Sbjct: 96 AAAATPGAVIPVSSVSYEVFLLLLQFLYSGQV 127
>01_06_0847 + 32411521-32411619,32411737-32411851,32412292-32412375,
32412430-32413478,32414690-32416371,32416477-32416586,
32417634-32418430,32418839-32418951,32419147-32419194,
32419425-32419652,32419732-32419829,32419967-32420019
Length = 1491
Score = 31.5 bits (68), Expect = 0.74
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = -3
Query: 257 VYNMKYYSRKSGNRSWKCVDGSGKEPRCRASVLTNSSRVVRRTGLHN 117
++N K YS S SW VD G E R S L N V+ RT + N
Sbjct: 1351 IFNRKTYSENSQELSWFFVDDVGYEQRA-VSDLRNHLSVLMRTKVSN 1396
>12_01_0252 + 1868670-1869200,1870167-1871120
Length = 494
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = -3
Query: 650 PHPVIFLNDISYEVLQAILQYIYTGEVIVS 561
P VI ++ I YEVL +LQ++Y+G+ V+
Sbjct: 101 PELVIPVSSIRYEVLVLVLQFLYSGQASVA 130
>11_01_0252 + 1934505-1935032,1936001-1936957
Length = 494
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = -3
Query: 650 PHPVIFLNDISYEVLQAILQYIYTGEVIVS 561
P VI ++ I YEVL +LQ++Y+G+ V+
Sbjct: 100 PELVIPVSSIRYEVLVLVLQFLYSGQASVA 129
>06_03_1063 - 27297755-27298748,27298791-27298834
Length = 345
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -3
Query: 752 DMTLAADGHLVKVHRMVLCLVSP-YIKTLIASV-DCPHPVIFLNDISYEVLQAILQYIYT 579
D+T G V HR VL SP ++ L + + I + D+ EV + +L +IYT
Sbjct: 171 DITFLVSGEPVAAHRCVLAARSPVFMAELFGDMKEKDSQSIEIKDMEAEVFRTLLHFIYT 230
>11_02_0051 +
7776312-7780228,7780627-7780695,7781920-7781979,
7782225-7782324,7782720-7782801,7782928-7782940,
7783621-7783681
Length = 1433
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = -3
Query: 302 SLSNHGNL-QLVLNRYVYNMKYYSRKSGNRSWKCVDGSGKEPRCRASVL---TNSSRVVR 135
++ HG + L +Y+YN + R W C+ R A ++ TN++RVV
Sbjct: 208 AIVGHGGAGKTTLAQYIYNDERVVNHFDVRMWICISRKLDVHRHTAEIMESATNNNRVVH 267
Query: 134 RTGLHNHPFHDKKIIKKIQR 75
T L+N + ++++ QR
Sbjct: 268 FTNLNNLQCALRGVLQESQR 287
>10_08_0129 - 15025076-15025858,15025951-15026283
Length = 371
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = -3
Query: 752 DMTLAADGHLVKVHRMVLCLVSP-----YIKTLIASVDCPHPVIFLNDISYEVLQAILQY 588
D+ G HR+VL + SP + + V+ + VI +ND+ +V +A+L +
Sbjct: 168 DVEFLVGGETFAAHRLVLAVRSPVFVAEHFGPMKEGVNV-NDVIEINDMDAQVFKALLNF 226
Query: 587 IYTGEVI 567
IYT ++
Sbjct: 227 IYTDTLL 233
>10_08_0122 - 14982676-14983043,14983957-14985145
Length = 518
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = -3
Query: 752 DMTLAADGHLVKVHRMVLCLVSP-----YIKTLIASVDCPHPVIFLNDISYEVLQAILQY 588
D+ G HR+VL + SP + + V+ + VI +ND+ +V +A+L +
Sbjct: 196 DVEFLVGGETFAAHRLVLAVRSPVFVAEHFGPMKEGVNV-NDVIEINDMDAQVFKALLNF 254
Query: 587 IYTGEVI 567
IYT ++
Sbjct: 255 IYTDTLL 261
>08_01_0657 + 5674907-5674993,5675615-5676583
Length = 351
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -3
Query: 752 DMTLAADGHLVKVHRMVLCLVSP-YIKTLIASV-DCPHPVIFLNDISYEVLQAILQYIYT 579
D+TL G HR +L SP ++ +L + + + + DI +V A+L +IYT
Sbjct: 186 DVTLVVSGKCFPAHRAILASRSPVFMASLFGDMKEKSSRSVEIRDIEPQVFGAMLGFIYT 245
Query: 578 GEV 570
V
Sbjct: 246 DSV 248
>07_03_1529 +
27491963-27492465,27493045-27493154,27493384-27493510,
27494082-27494430,27494975-27495251,27496236-27496333,
27498090-27498214,27498270-27498326,27498328-27498370,
27498581-27498667,27498802-27498882,27499735-27499901,
27499987-27500098,27500188-27500390,27500473-27500607,
27501106-27501205
Length = 857
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -3
Query: 752 DMTLAADGHLVKVHRMVLCLVSPYIKTLI--ASVDCPHPVIFLNDISYEVLQAILQYIYT 579
D+T DG + H++VL SP + + D I + D+ V +A+L ++Y
Sbjct: 312 DITFEVDGEVFPAHKVVLAARSPVFRAQLFGPMKDKNMKRITIEDMEASVFKALLHFMYW 371
Query: 578 GEV 570
E+
Sbjct: 372 DEL 374
>06_03_1104 +
27623632-27623795,27624052-27624175,27624316-27624832,
27624943-27625073,27625161-27625567,27625690-27625963,
27626195-27626814,27627424-27627859
Length = 890
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 608 LQAILQYIYTGEVIVSKENFKSFMTAGRALCIRGLDDM 495
L+ IL+Y YT V+V +N K T + ++ L +M
Sbjct: 680 LKKILEYTYTNSVMVDDDNIKPVRTLAKYCHLKSLQEM 717
>10_08_0054 + 14501357-14502478
Length = 373
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Frame = -3
Query: 752 DMTLAADGHLVKVHRMVLCLVSPYIK-----TLIASVD-CPHPVIFLNDISYEVLQAILQ 591
D+T G V HR VL SP + + SV + V+ ++D+ +V +A+L
Sbjct: 199 DVTFHVAGEEVPAHRSVLAARSPVFRAELFGAMKESVSGGSNAVVEVDDMEADVFRALLA 258
Query: 590 YIYTGEV 570
++YT E+
Sbjct: 259 FVYTDEL 265
>04_03_0095 + 11114971-11115939,11115954-11116556
Length = 523
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +2
Query: 188 SPNRRRISNFDYQICGYSISCCKHIYSVPVVS 283
+PN R + D ++ +++ CC+++ SVP+ S
Sbjct: 261 APNLRTLCILDKRLRSFALRCCQNVKSVPIDS 292
>01_07_0014 -
40455673-40455723,40455815-40455892,40455987-40456049,
40456250-40456390,40456851-40456949,40457403-40457477,
40457556-40457652,40457738-40457805,40458456-40458512,
40458613-40458671,40458798-40458921,40459208-40459264,
40459378-40459457,40459585-40459793,40459868-40459986
Length = 458
Score = 29.5 bits (63), Expect = 3.0
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = -3
Query: 533 AGRALCIRGLDDMPVNEDTVKGDQINMNEYNNEVSENLNVVKESTG-----TESMDDMLI 369
A +AL +DD+ D +K ++NM+ Y+ E E L + G + +D L
Sbjct: 80 AAKALAKGAVDDVA---DELK--ELNMDNYDEE-EEGLEIFSSGQGDLYYASNDLDPYLK 133
Query: 368 NTDEGMHEPEANDGTKEPT 312
N DE + E D T +PT
Sbjct: 134 NNDEDDDDEEIEDMTIKPT 152
>09_04_0680 -
19401891-19402049,19402556-19402928,19403385-19403421,
19403587-19403667,19405215-19405280,19407453-19407948,
19408050-19408283,19408473-19408772,19409241-19409423,
19410412-19410414
Length = 643
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 390 FCACRFFYYIQVFTDFIIVFVHIDLVSFYCIFIYRHIV 503
F RF + V + F+ +F+ + V +CIF+ RH++
Sbjct: 4 FLQGRFIFGPDVRSLFLTIFLILAPVLVFCIFVARHLI 41
>08_01_0802 - 7754561-7755628
Length = 355
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -3
Query: 752 DMTLAADGHLVKVHRMVLCLVSPYIKTLIASV--DCPHPVIFLNDISYEVLQAILQYIYT 579
D+ G H++VL + SP K + + I + D+ V +A+LQ+IYT
Sbjct: 196 DVVFDVAGETFPAHKLVLAMRSPVFKAELCGPMRESGTEPISIVDMQPVVFKALLQFIYT 255
>02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812
Length = 492
Score = 28.3 bits (60), Expect = 6.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3
Query: 245 KYYSRKSGNRSWKC 204
K+YSRK G + WKC
Sbjct: 131 KHYSRKHGEKKWKC 144
>01_05_0409 -
21896478-21897005,21897098-21897292,21897405-21897542,
21897641-21897728,21897837-21897925,21898032-21898553
Length = 519
Score = 28.3 bits (60), Expect = 6.9
Identities = 25/85 (29%), Positives = 37/85 (43%)
Frame = -3
Query: 611 VLQAILQYIYTGEVIVSKENFKSFMTAGRALCIRGLDDMPVNEDTVKGDQINMNEYNNEV 432
VLQAI + Y+G + ++ENF+ F++ L +D V +V D+ + E
Sbjct: 308 VLQAI--WPYSGHYLPTEENFREFIS---FLEENSVDLADVKRCSVDDDEFPSFKKTEEK 362
Query: 431 SENLNVVKESTGTESMDDMLINTDE 357
E E T E MD I E
Sbjct: 363 PEEAEKPTEPTHDEIMDSSQIELPE 387
>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +1
Query: 310 SVGSFVPSLASGSCIPSSVLINISSIDSVPVDSFTTFRFSLTSLLYSFILIWSPFTVSSF 489
S S + L G C + +L+N+S I SV ++ L YS +L SP+ S F
Sbjct: 909 SRSSSLKLLLDGEC--TDLLVNLSGIQSVVFENQPQMSICDDILQYSTVLSSSPYDKSQF 966
>05_01_0019 -
129767-129931,130078-130257,130491-130728,130833-131236,
131284-131427,131709-131995,132071-132150,132563-132714,
132793-132909,133292-133450,133546-133946,134106-134423,
135050-135095,135203-135310
Length = 932
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/44 (22%), Positives = 26/44 (59%)
Frame = -3
Query: 488 NEDTVKGDQINMNEYNNEVSENLNVVKESTGTESMDDMLINTDE 357
N D+VKGD++ + +++S ++ K+ + T + ++ N ++
Sbjct: 240 NNDSVKGDKVQDGSFKSQISSGHSINKQPSRTLVVRNITANIED 283
>04_04_1457 -
33741048-33741146,33741647-33741760,33741938-33742052,
33742154-33742560,33743342-33743476,33743576-33743970,
33744225-33744916,33745014-33745097,33745195-33745286,
33745374-33745457,33745535-33745714,33746258-33746302,
33746399-33746692,33747199-33747585,33747713-33747899,
33748042-33748118,33748936-33749067,33749315-33749416,
33749744-33749827,33749902-33749992,33750105-33750178,
33750644-33750664,33751433-33751477,33752427-33752561,
33752693-33752752
Length = 1376
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 437 EVSENLNVVKESTGTESMDDMLINTDEGMHEPEANDGTKEPTLQYS 300
E++ L+ ++ G S DD+ G H EA+ T LQY+
Sbjct: 472 EMANELSRFSDTPGDASFDDLFPPKKRGDHGAEASTSTTGEELQYN 517
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,004,379
Number of Sequences: 37544
Number of extensions: 412762
Number of successful extensions: 1142
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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