Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14f05
(754 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 81 8e-18
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 65 6e-13
DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 23 4.1
DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex det... 23 4.1
DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex det... 23 4.1
DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex det... 23 4.1
DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex det... 23 4.1
DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex det... 23 4.1
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 23 4.1
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 23 4.1
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 23 4.1
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 23 4.1
U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive o... 22 5.4
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 22 5.4
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 22 5.4
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 22 5.4
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 21 9.4
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 21 9.4
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 21 9.4
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 21 9.4
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 21 9.4
AB178034-1|BAD27112.1| 76|Apis mellifera apiceropsin protein. 21 9.4
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 81.4 bits (192), Expect = 8e-18
Identities = 36/83 (43%), Positives = 52/83 (62%)
Frame = -3
Query: 752 DMTLAADGHLVKVHRMVLCLVSPYIKTLIASVDCPHPVIFLNDISYEVLQAILQYIYTGE 573
D+TLA DG +K HR+VL SPY + L+ S C HPVI L D+++ L A++++IY GE
Sbjct: 33 DVTLACDGRSLKAHRVVLSACSPYFRELLKSTPCKHPVIVLQDVAFSDLHALVEFIYHGE 92
Query: 572 VIVSKENFKSFMTAGRALCIRGL 504
V V + + SF+ L + GL
Sbjct: 93 VNVHQRSLSSFLKTAEVLRVSGL 115
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 65.3 bits (152), Expect = 6e-13
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = -3
Query: 752 DMTLAADGHLVKVHRMVLCLVSPYIKTLIASVDCPHPVIFL-NDISYEVLQAILQYIYTG 576
D+TLA + +K H++VL S Y + L+ S C HP I + D+ + L+ I++++Y G
Sbjct: 37 DVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRG 96
Query: 575 EVIVSKENFKSFMTAGRALCIRGLDDMPVNED 480
E+ VS+ +S + L I+GL ++P + D
Sbjct: 97 EIDVSQAELQSLLKTADQLKIKGLCEVPESRD 128
>DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor
protein.
Length = 459
Score = 22.6 bits (46), Expect = 4.1
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 400 VDSFTTFRFSLTSLLYSFILIWSPFTV 480
V S T L++++ +F + W+PF V
Sbjct: 252 VQSRKTITRMLSAVVITFFICWAPFHV 278
>DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 22.6 bits (46), Expect = 4.1
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = -3
Query: 326 TKEPTLQYSLSNHGNLQLVLNRY---VYNMKY 240
+KEP + SLSN+ N N Y YN+ Y
Sbjct: 76 SKEPKIISSLSNNYNYNNYNNNYKPLYYNINY 107
>DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 22.6 bits (46), Expect = 4.1
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = -3
Query: 326 TKEPTLQYSLSNHGNLQLVLNRY---VYNMKY 240
+KEP + SLSN+ N N Y YN+ Y
Sbjct: 76 SKEPKIISSLSNNYNYNNYNNNYKPLYYNINY 107
>DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 22.6 bits (46), Expect = 4.1
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = -3
Query: 326 TKEPTLQYSLSNHGNLQLVLNRY---VYNMKY 240
+KEP + SLSN+ N N Y YN+ Y
Sbjct: 76 SKEPKIISSLSNNYNYNNYNNNYKPLYYNINY 107
>DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 22.6 bits (46), Expect = 4.1
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = -3
Query: 326 TKEPTLQYSLSNHGNLQLVLNRY---VYNMKY 240
+KEP + SLSN+ N N Y YN+ Y
Sbjct: 76 SKEPKIISSLSNNYNYNNYNNNYKPLYYNINY 107
>DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex
determiner protein.
Length = 178
Score = 22.6 bits (46), Expect = 4.1
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 359 EGMHEPEANDGTKEPTLQYSLSNHGNLQLVLNRYVYNMKYY 237
E + + + +KEP + SLSN+ N YN K Y
Sbjct: 65 ERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNYNKKLY 105
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.6 bits (46), Expect = 4.1
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = -3
Query: 326 TKEPTLQYSLSNHGNLQLVLNRY---VYNMKY 240
+KEP + SLSN+ N N Y YN+ Y
Sbjct: 309 SKEPKIISSLSNNYNYNNYNNNYKPLYYNINY 340
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.6 bits (46), Expect = 4.1
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = -3
Query: 326 TKEPTLQYSLSNHGNLQLVLNRY---VYNMKY 240
+KEP + SLSN+ N N Y YN+ Y
Sbjct: 309 SKEPKIISSLSNNYNYNNYNNNYKPLYYNINY 340
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.6 bits (46), Expect = 4.1
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = -3
Query: 326 TKEPTLQYSLSNHGNLQLVLNRY---VYNMKY 240
+KEP + SLSN+ N N Y YN+ Y
Sbjct: 309 SKEPKIISSLSNNYNYNNYNNNYKPLYYNINY 340
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 22.6 bits (46), Expect = 4.1
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = -3
Query: 326 TKEPTLQYSLSNHGNLQLVLNRY---VYNMKY 240
+KEP + SLSN+ N N Y YN+ Y
Sbjct: 298 SKEPKIISSLSNNYNYNNYNNNYKPLYYNINY 329
>U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive
opsin protein.
Length = 377
Score = 22.2 bits (45), Expect = 5.4
Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = +1
Query: 436 SLLYSFILIWSPFTVSSFTGI-SSKPLM---QSALPAV 537
++ + F+L W+P+ + G+ ++ L+ + LPAV
Sbjct: 286 TIFFLFLLAWTPYATVALIGVYGNRELLTPVSTMLPAV 323
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 5.4
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = -3
Query: 326 TKEPTLQYSLSNHGNLQLVLNRYV---YNMKY 240
+KEP + SLSN+ N N Y YN+ Y
Sbjct: 309 SKEPKIISSLSNNYNYNNYNNNYKPLHYNINY 340
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 22.2 bits (45), Expect = 5.4
Identities = 7/27 (25%), Positives = 16/27 (59%)
Frame = -3
Query: 494 PVNEDTVKGDQINMNEYNNEVSENLNV 414
P+N +K +I+ NN+ E++++
Sbjct: 465 PINNCEIKAGEIDAERLNNQGIESIDI 491
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 22.2 bits (45), Expect = 5.4
Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = +1
Query: 436 SLLYSFILIWSPFTVSSFTGI-SSKPLM---QSALPAV 537
++ + F+L W+P+ + G+ ++ L+ + LPAV
Sbjct: 286 TIFFLFLLAWTPYATVALIGVYGNRELLTPVSTMLPAV 323
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 21.4 bits (43), Expect = 9.4
Identities = 6/16 (37%), Positives = 12/16 (75%)
Frame = +1
Query: 451 FILIWSPFTVSSFTGI 498
+ + W+P+ V +F+GI
Sbjct: 287 WFMAWTPYLVINFSGI 302
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 21.4 bits (43), Expect = 9.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -3
Query: 143 VVRRTGLHNHPFHDKKIIKKI 81
V+RRTG + P +++ IK +
Sbjct: 151 VIRRTGEGSKPLFEREEIKNV 171
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.4 bits (43), Expect = 9.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -3
Query: 143 VVRRTGLHNHPFHDKKIIKKI 81
V+RRTG + P +++ IK +
Sbjct: 162 VIRRTGEGSKPLFEREEIKNV 182
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.4 bits (43), Expect = 9.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -3
Query: 143 VVRRTGLHNHPFHDKKIIKKI 81
V+RRTG + P +++ IK +
Sbjct: 162 VIRRTGEGSKPLFEREEIKNV 182
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 21.4 bits (43), Expect = 9.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -3
Query: 143 VVRRTGLHNHPFHDKKIIKKI 81
V+RRTG + P +++ IK +
Sbjct: 151 VIRRTGEGSKPLFEREEIKNV 171
>AB178034-1|BAD27112.1| 76|Apis mellifera apiceropsin protein.
Length = 76
Score = 21.4 bits (43), Expect = 9.4
Identities = 6/16 (37%), Positives = 12/16 (75%)
Frame = +1
Query: 451 FILIWSPFTVSSFTGI 498
+ + W+P+ V +F+GI
Sbjct: 37 WFMAWTPYLVINFSGI 52
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,004
Number of Sequences: 438
Number of extensions: 4727
Number of successful extensions: 31
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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