Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14f04
         (503 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical p...   230   5e-61
Z93391-7|CAB07685.3|  405|Caenorhabditis elegans Hypothetical pr...    32   0.27 
AJ345015-1|CAC87812.1|  577|Caenorhabditis elegans FEH-1 protein...    28   3.3  
AC025723-11|AAN84832.2|  554|Caenorhabditis elegans Mammalian fe...    28   3.3  
AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe...    28   3.3  
AC025723-9|AAN84831.1|  640|Caenorhabditis elegans Mammalian fe6...    28   3.3  
U50069-7|AAB37561.1|  913|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AY525080-1|AAS13529.1|  362|Caenorhabditis elegans serine or cys...    28   4.4  
AC087794-5|AAM48555.1|  362|Caenorhabditis elegans Serpin protei...    28   4.4  
Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical
           protein Y57G11C.16 protein.
          Length = 154

 Score =  230 bits (562), Expect = 5e-61
 Identities = 102/139 (73%), Positives = 123/139 (88%)
 Frame = -2

Query: 442 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 263
           MSL+IP+KFQHI R+MNTNIDG RKV +A+TAIKGVGRR++ +  +KAD+D++KRAGE T
Sbjct: 1   MSLIIPEKFQHIHRVMNTNIDGNRKVPYALTAIKGVGRRFAFVCCRKADVDVNKRAGELT 60

Query: 262 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 83
           EE+ +KI+TIM NP QYKIP+WFLNRQKDI DGK  QL S+ +D+KLREDLER+KKIR H
Sbjct: 61  EEDFDKIVTIMQNPSQYKIPNWFLNRQKDIKDGKTGQLLSTAVDNKLREDLERMKKIRLH 120

Query: 82  RGMRHYWGLRVRGQHTKTT 26
           RG+RHYWGLRVRGQHTKTT
Sbjct: 121 RGLRHYWGLRVRGQHTKTT 139


>Z93391-7|CAB07685.3|  405|Caenorhabditis elegans Hypothetical
           protein W04G5.9 protein.
          Length = 405

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 20/63 (31%), Positives = 33/63 (52%)
 Frame = -2

Query: 193 LNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTWQER 14
           L+ + DIV  KYSQ   + L S++  D++ +++IR       Y+GL     H   +W+  
Sbjct: 256 LDFEYDIVKDKYSQSPENGLFSQVY-DVKNIRRIRDTNTNEVYFGLVDGADHGTISWRFD 314

Query: 13  KXL 5
           K L
Sbjct: 315 KDL 317


>AJ345015-1|CAC87812.1|  577|Caenorhabditis elegans FEH-1 protein
           protein.
          Length = 577

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 100 KKIRAHRGMRHYWGLRVRGQHTKTTW 23
           K + AH   RH+ G+ + GQH  +T+
Sbjct: 523 KVLDAHSSSRHHSGMSIHGQHPPSTY 548


>AC025723-11|AAN84832.2|  554|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform c protein.
          Length = 554

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 100 KKIRAHRGMRHYWGLRVRGQHTKTTW 23
           K + AH   RH+ G+ + GQH  +T+
Sbjct: 500 KVLDAHSSSRHHSGMSIHGQHPPSTY 525


>AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform a protein.
          Length = 691

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 100 KKIRAHRGMRHYWGLRVRGQHTKTTW 23
           K + AH   RH+ G+ + GQH  +T+
Sbjct: 662 KVLDAHSSSRHHSGMSIHGQHPPSTY 687


>AC025723-9|AAN84831.1|  640|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform b protein.
          Length = 640

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 100 KKIRAHRGMRHYWGLRVRGQHTKTTW 23
           K + AH   RH+ G+ + GQH  +T+
Sbjct: 611 KVLDAHSSSRHHSGMSIHGQHPPSTY 636


>U50069-7|AAB37561.1|  913|Caenorhabditis elegans Hypothetical
           protein C09B9.7 protein.
          Length = 913

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = -2

Query: 238 TIMSNPRQYKIPDWFLNRQK-DIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYW 62
           +I  NP    + +  LNR      D KY    SS+++  ++ DLE+LKKI   + ++ Y 
Sbjct: 111 SIRDNPVSQSLANILLNRDTAPYYDYKY---LSSDIELMVK-DLEKLKKINKEKTLKMY- 165

Query: 61  GLRVRG 44
           GL   G
Sbjct: 166 GLLAHG 171


>AY525080-1|AAS13529.1|  362|Caenorhabditis elegans serine or
           cysteine protease inhibitorprotein.
          Length = 362

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
 Frame = -2

Query: 496 FFVSPVLCLGTLVRNL----TKMSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGR 329
           F V+P   L T ++N       + L  P   Q I   +NT  +GK K +    +IK    
Sbjct: 95  FTVNPTF-LSTALKNYGADAKSLDLTTPAAVQEINSFVNTATNGKIKNIATQDSIKDAIA 153

Query: 328 RYSNIVLKKADIDLDKRAGECTEEE 254
              N +  KAD D DK  G    E+
Sbjct: 154 LLINSIYFKADWD-DKFDGMSVSEQ 177


>AC087794-5|AAM48555.1|  362|Caenorhabditis elegans Serpin protein 3
           protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
 Frame = -2

Query: 496 FFVSPVLCLGTLVRNL----TKMSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGR 329
           F V+P   L T ++N       + L  P   Q I   +NT  +GK K +    +IK    
Sbjct: 95  FTVNPTF-LSTALKNYGADAKSLDLTTPAAVQEINSFVNTATNGKIKNIATQDSIKDAIA 153

Query: 328 RYSNIVLKKADIDLDKRAGECTEEE 254
              N +  KAD D DK  G    E+
Sbjct: 154 LLINSIYFKADWD-DKFDGMSVSEQ 177


>Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK829.4 protein.
          Length = 536

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -2

Query: 226 NPRQYKIPDWFLNRQKDIVDGKYS-QLTSSNLDSKLREDL 110
           NP  YK+ D++ N+  +++  K + +L S++L  K +++L
Sbjct: 40  NPSFYKMVDFYFNKGAEVIAPKLAEELKSNSLSQKDKKNL 79


>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical protein
            C13F10.4 protein.
          Length = 2076

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 359  CDDGYQRCWPEVLQHCS 309
            C + YQ CWP +L  CS
Sbjct: 1512 CREYYQICWPPILLACS 1528


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,185,460
Number of Sequences: 27780
Number of extensions: 259550
Number of successful extensions: 826
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)