Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14e24
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0557 + 4394754-4396040 111 8e-25
12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106 104 7e-23
01_06_1363 - 36681605-36681789,36681875-36681908,36682017-366821... 96 3e-20
05_05_0059 + 22011168-22011662,22012668-22012894,22013029-220133... 92 5e-19
01_01_1227 + 9912646-9913056,9913306-9913413,9913517-9913672,991... 74 1e-13
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672... 62 6e-10
09_06_0242 - 21806370-21806483,21806574-21806660,21806865-218069... 51 1e-06
08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624 40 0.003
02_05_0156 + 26341904-26342801,26343469-26344148 32 0.60
03_01_0135 + 1061874-1061896,1061953-1061959,1062384-1062464,106... 30 1.8
01_07_0065 - 40851101-40851247,40851352-40851495,40851781-408518... 29 5.6
09_04_0166 + 15278511-15278862,15279790-15280049,15280153-152802... 28 9.7
>11_01_0557 + 4394754-4396040
Length = 428
Score = 111 bits (266), Expect = 8e-25
Identities = 64/191 (33%), Positives = 104/191 (54%), Gaps = 9/191 (4%)
Frame = -3
Query: 684 WGFWTLMTEMPSYLKQVLGVDIKANGVMSALPYLAMYLLSFPFGFLSDYVLKKELISITA 505
+ + LM +P+Y K L + ++ G LPYL M+L S G L+D+++ ++++S+T
Sbjct: 239 YALYVLMNWLPTYFKLGLQLSLQDMGFSKMLPYLNMFLFSNIGGVLADHLITRKILSVTK 298
Query: 504 TRKFNNSVGLFGPAIALIGLSY--SPAGNVTMAVLILTVVVGLNAGHLTGFMLVHIDMAP 331
TRK N+VG AIAL+ L +P+G A+ +V +G A GF + H+D+AP
Sbjct: 299 TRKLLNTVGFVVSAIALMALPLFRTPSG----AIFCSSVSLGFLALGRAGFAVNHMDVAP 354
Query: 330 NFAGTLMGITNCVANIVSIIAPLAAGAVLK-------DETDANEWRKVFYMASALYIVGN 172
FAG +MGI+N + I+ G +L+ D T + WR VF++ L I +
Sbjct: 355 KFAGIVMGISNTAGTLAGIVGVGLTGRILEAAKASNMDLTSSESWRTVFFVPGYLCIFSS 414
Query: 171 LLFIFFGTSER 139
+F+ F T E+
Sbjct: 415 FIFLIFSTGEK 425
>12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106
Length = 427
Score = 104 bits (250), Expect = 7e-23
Identities = 57/191 (29%), Positives = 105/191 (54%), Gaps = 9/191 (4%)
Frame = -3
Query: 684 WGFWTLMTEMPSYLKQVLGVDIKANGVMSALPYLAMYLLSFPFGFLSDYVLKKELISITA 505
+ + LM +P+Y + L + ++ G LPY M++ S G ++D+++ + ++SIT
Sbjct: 238 YALYVLMNWLPTYFELGLQLSLQDMGSSKMLPYFNMFIFSNIGGVVADHLITRRILSITK 297
Query: 504 TRKFNNSVGLFGPAIALIGLSY--SPAGNVTMAVLILTVVVGLNAGHLTGFMLVHIDMAP 331
TRK N++G A+AL+ L +P+G VL ++ +G A GF + H+D+AP
Sbjct: 298 TRKLLNTIGFVVSAVALMALPLFRTPSG----TVLCSSISLGFLALGRAGFAVNHMDVAP 353
Query: 330 NFAGTLMGITNCVANIVSIIAPLAAGAVLK-------DETDANEWRKVFYMASALYIVGN 172
FAG +MG++N + I+ G++L+ D T++ W+ VF++ L I +
Sbjct: 354 KFAGIVMGVSNTAGTLAGIVGVGLTGSILEGAKASNMDLTNSETWKTVFFVPGYLCIFSS 413
Query: 171 LLFIFFGTSER 139
++F+ F T E+
Sbjct: 414 IIFLIFSTGEK 424
>01_06_1363 -
36681605-36681789,36681875-36681908,36682017-36682154,
36682578-36682724,36682821-36682865,36683043-36683331,
36683443-36683669,36684109-36684528
Length = 494
Score = 95.9 bits (228), Expect = 3e-20
Identities = 56/181 (30%), Positives = 97/181 (53%)
Frame = -3
Query: 681 GFWTLMTEMPSYLKQVLGVDIKANGVMSALPYLAMYLLSFPFGFLSDYVLKKELISITAT 502
G++ +++ MP Y K + V+++ SALP++ M +L + G +SD +++ SIT T
Sbjct: 313 GYFVILSWMPVYFKTIYHVNLREAAWFSALPWVMMAVLGYVAGVVSDRLIQNGT-SITLT 371
Query: 501 RKFNNSVGLFGPAIALIGLSYSPAGNVTMAVLILTVVVGLNAGHLTGFMLVHIDMAPNFA 322
RK ++G GP +AL+GL+ A + +A LT+ VGL + +GF++ ++AP +A
Sbjct: 372 RKIMQTIGFVGPGVALLGLN--AAKSPVIASAWLTIAVGLKSFGHSGFLVNLQEIAPQYA 429
Query: 321 GTLMGITNCVANIVSIIAPLAAGAVLKDETDANEWRKVFYMASALYIVGNLLFIFFGTSE 142
G L G++N +I+ + AG + +R + S LY L + F T E
Sbjct: 430 GVLHGMSNTAGTFAAILGTVGAGFFV---DRMGSFRGFLILTSLLYFSSTLFWDIFATGE 486
Query: 141 R 139
R
Sbjct: 487 R 487
>05_05_0059 +
22011168-22011662,22012668-22012894,22013029-22013377,
22013464-22013508,22013589-22013735,22013851-22013988,
22014126-22014159,22014258-22014430
Length = 535
Score = 91.9 bits (218), Expect = 5e-19
Identities = 43/154 (27%), Positives = 86/154 (55%)
Frame = -3
Query: 714 SLAIVHCCQAWGFWTLMTEMPSYLKQVLGVDIKANGVMSALPYLAMYLLSFPFGFLSDYV 535
++ + + WG++ L++ MP Y K V V++K SA+P+ M L + G +D++
Sbjct: 347 AIIVANVVNNWGYFVLLSWMPVYFKTVYNVNLKQAAWFSAIPWAVMALSGYVAGASADFL 406
Query: 534 LKKELISITATRKFNNSVGLFGPAIALIGLSYSPAGNVTMAVLILTVVVGLNAGHLTGFM 355
+K S+ RK S+G GP ++L+ L ++ +V A +++T+ + L++ G+
Sbjct: 407 IKSG-FSVALVRKIMQSIGFIGPGVSLLCLRFAQTPSV--AAVLMTIALSLSSFSQAGYF 463
Query: 354 LVHIDMAPNFAGTLMGITNCVANIVSIIAPLAAG 253
D+AP +AG+L G+TN + + +I++ + G
Sbjct: 464 CNVQDIAPKYAGSLHGLTNGIGTVAAIVSTIGTG 497
>01_01_1227 +
9912646-9913056,9913306-9913413,9913517-9913672,
9914110-9914325,9914436-9914645,9914722-9914859,
9915076-9915177,9915508-9915603
Length = 478
Score = 74.1 bits (174), Expect = 1e-13
Identities = 46/129 (35%), Positives = 71/129 (55%), Gaps = 4/129 (3%)
Frame = -3
Query: 735 LRQSPSLSLAIVHCCQAWGFWTLMTEMPSYLKQVLGVDIKANGVMSALPYLAMYLLSFPF 556
L + P +L + H C WG + L+T MP+Y QVL ++ +G+ LP+L M + +
Sbjct: 335 LSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFG 394
Query: 555 GFLSDYVLKKELISITATRKFNNSVGLFGPAIALIGLSY--SPAGNVTMAVLILTVVVGL 382
G+++D ++ + L S+T RK S+G GPA L LS+ SPA V V++GL
Sbjct: 395 GWIADTLVSRGL-SVTTVRKIMQSIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGVLLGL 453
Query: 381 N--AGHLTG 361
+ AG L G
Sbjct: 454 SNTAGVLAG 462
>09_06_0351 +
22466160-22466217,22466514-22467052,22467186-22467293,
22467391-22467546,22467916-22468131,22468639-22468776,
22468880-22468981,22469089-22469146,22469346-22469408,
22469543-22469640
Length = 511
Score = 61.7 bits (143), Expect = 6e-10
Identities = 50/168 (29%), Positives = 80/168 (47%)
Frame = -3
Query: 642 KQVLGVDIKANGVMSALPYLAMYLLSFPFGFLSDYVLKKELISITATRKFNNSVGLFGPA 463
++VL ++ +G++ LP+L M + + G+++D ++ + +SIT RK S+G GPA
Sbjct: 358 RKVLKFNLTESGLLCVLPWLTMAIFANIGGWIADTLVGRG-VSITNVRKIMQSIGFLGPA 416
Query: 462 IALIGLSYSPAGNVTMAVLILTVVVGLNAGHLTGFMLVHIDMAPNFAGTLMGITNCVANI 283
+ L L S MAVL + G +A +G H D+ P GT T +
Sbjct: 417 LFLTLL--SKVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRVFGT--AATGYI--- 469
Query: 282 VSIIAPLAAGAVLKDETDANEWRKVFYMASALYIVGNLLFIFFGTSER 139
L G +D W VF +A LYIVG +++ F T E+
Sbjct: 470 ------LQKG---RDVEKHGSWDSVFQVAVVLYIVGTVVWNVFSTGEK 508
>09_06_0242 -
21806370-21806483,21806574-21806660,21806865-21806917,
21806999-21807140,21807406-21807501,21808617-21808785,
21808859-21808939,21809032-21809106,21810322-21810387,
21811013-21811158,21811898-21812344
Length = 491
Score = 50.8 bits (116), Expect = 1e-06
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 1/167 (0%)
Frame = -3
Query: 603 MSALPYLAMYLLSFPFGFLSDYVLKKELISITATRKFNNSVGLFGPAIALIGLSYSPAGN 424
+S LP L +++ +D ++ + T RK ++ PA ++ S
Sbjct: 329 VSVLPPLGSMIITSIAAPFADNLISNG-VDTTKVRKICQTIAFLSPATFMMLSSVDLGVP 387
Query: 423 VTMAVLILTVVVGLNAGHLTGFMLVHIDMAPNFAGTLMGITNCVANIVSIIAPLAAGAVL 244
V LT + L++ L+G H D++ +A L+GITN V + I+ G +L
Sbjct: 388 PWEIVAFLTSGLALSSFALSGLYCTHQDISREYASILLGITNTVGAVPGIVGVALTGYLL 447
Query: 243 KDETDANEWR-KVFYMASALYIVGNLLFIFFGTSERQKWNDVDENES 106
D T + W +F + Y+ G +++ F +SE Q+++ + S
Sbjct: 448 -DTT--HSWSISLFAPSIFFYLTGTAVWLAFASSEPQEFSKSEPESS 491
>08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624
Length = 528
Score = 39.5 bits (88), Expect = 0.003
Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 8/145 (5%)
Frame = -3
Query: 486 SVGLFGPAI--ALIGLSYSPAGNVTMAVLILTVVVGL--NAGHLTGFMLVHIDMAPNFAG 319
++G+FG A+ AL G Y + L++ ++ GL G + +V + G
Sbjct: 153 TIGMFGTAVFTALFGAGYWLNIHNFYYFLVIQMIAGLFQAIGWPSVVAIVGNWFGKSKRG 212
Query: 318 TLMGITNCVANIVSIIAPLAAGAVLKDETDANEWRKVFYMASALYI-VGNLLFIFFGTSE 142
+MGI N ++ +I L A +LK W F + S + + VG L+F+F S
Sbjct: 213 LIMGIWNAHTSVGNISGSLLAAFLLKFG-----WGWSFAIPSLIMVAVGLLVFVFLPVSP 267
Query: 141 RQKWNDVDENE---SKDTTSEQRIE 76
D+D+ E KDTT E +E
Sbjct: 268 EVMEIDIDDGEISSVKDTTKEPLLE 292
>02_05_0156 + 26341904-26342801,26343469-26344148
Length = 525
Score = 31.9 bits (69), Expect = 0.60
Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Frame = -3
Query: 471 GPAIALIGLSYSPAGNVTMAVLILTVVVGL--NAGHLTGFMLVHIDMAPNFAGTLMGITN 298
G A+AL G+ Y + + L V+ GL + G + +V G +MGI N
Sbjct: 110 GTAVALFGVGYFLSLHSLAFYLAAQVIAGLLQSTGWPSVVAIVGNWFRGRRRGLIMGIWN 169
Query: 297 CVANIVSIIAPLAAGAVLKDETDANEWRKVFYMASALYIVGNLLFIFF 154
+I +I L A AVL+ W F + L G +L FF
Sbjct: 170 AHTSIGNISGSLIAAAVLR-----YGWGWSFIVPGLLIAFGGVLVFFF 212
>03_01_0135 +
1061874-1061896,1061953-1061959,1062384-1062464,
1062562-1062604,1064875-1064983,1065221-1065281,
1065562-1065669,1065670-1065718,1065922-1066055
Length = 204
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = -2
Query: 424 RHDGRSNSHSGGWVECWASNRLYVGAH*HGSQLRWH-IDGHHQLCCQYCIDNCAL 263
+H+ S +G WV S Y + S L W I+ + LCC + + N L
Sbjct: 35 QHENISQLSTGWWVGMTVSTTRYEAGKQNCSSLNWKLIEVNDNLCCVFWLSNAIL 89
>01_07_0065 -
40851101-40851247,40851352-40851495,40851781-40851872,
40851954-40852035,40852127-40852193,40852284-40852375,
40852470-40852586,40852764-40852881,40852969-40853161,
40853258-40853339,40853607-40853744,40853829-40854023
Length = 488
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = -3
Query: 441 YSPAGNVTMAVLILTVVVGLNAGHLTGFMLVHIDMAPNFAGTLMGIT 301
+ P G ++ +L+ ++G++ GH+ M H D + ++MGIT
Sbjct: 305 FEPEGLLSSLSAVLSTIIGVHYGHVLVHMKSHTDRLKQW--SIMGIT 349
>09_04_0166 +
15278511-15278862,15279790-15280049,15280153-15280251,
15280788-15280961,15283009-15283638
Length = 504
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = -3
Query: 333 PNFAGTLMGITNCVANIVSIIAPLAAGAVLKDETDANEWRKVFYMASALYIVGNLLFIFF 154
P F+ +G+ + + + S++ L LKD +R + + A LY V LL + F
Sbjct: 291 PGFSQEFVGMVHAIGAVASMVGVLVYHKYLKD----YPFRSILFYAQLLYGVSGLLDLTF 346
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,793,903
Number of Sequences: 37544
Number of extensions: 453450
Number of successful extensions: 1189
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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