Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14e24
         (788 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform ...    28   0.38 
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    25   2.7  
AY146749-1|AAO12064.1|  336|Anopheles gambiae odorant-binding pr...    24   4.7  

>AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform A
           protein.
          Length = 753

 Score = 27.9 bits (59), Expect = 0.38
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +2

Query: 176 PTMYNAEAI*NTLRH--SLASVSSFSTAPAAKGAIIDTILATQLVMPINVPAKLGAMSMC 349
           P  YN   +  T  H  SL    S+ +APA   +  D I   Q     N PA  GA  MC
Sbjct: 551 PNTYNRFLVAPTGDHVISLIDEISYLSAPAPLLSQYDDINPEQFCNGDNRPADCGANCMC 610

Query: 350 TN 355
           T+
Sbjct: 611 TH 612


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = +1

Query: 556 KWKTQQVHSKVR*SRHDAIRFNIDSENLL----QVRRHLRHQSPKAPRLATMHDSQRQ 717
           ++ T +V      S H  +RF++DS ++L    Q+ RH     P+  R      + R+
Sbjct: 183 RYNTWEVLKSYWYSDHRYVRFSVDSSSVLGNGIQLHRHQHQLQPQQRRFHRQSPAHRR 240


>AY146749-1|AAO12064.1|  336|Anopheles gambiae odorant-binding
           protein AgamOBP38 protein.
          Length = 336

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 708 PATGKGTDVNIVSQGVLKFLWFPNLSQ 788
           PATG G D    +Q  L+ L + N+S+
Sbjct: 24  PATGHGYDTKSFAQAYLECLRYLNISR 50


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 814,183
Number of Sequences: 2352
Number of extensions: 18697
Number of successful extensions: 34
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 82744797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)