Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14e23
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 111 8e-25
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 109 2e-24
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 105 4e-23
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 104 9e-23
03_01_0034 + 318432-318825,318902-319851 56 4e-08
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 55 7e-08
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 55 7e-08
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 55 7e-08
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 55 7e-08
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 55 7e-08
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 54 9e-08
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 54 2e-07
01_06_1014 - 33810112-33811995 31 0.74
12_02_0885 + 23994354-23994584,23994987-23995342,23995549-239956... 31 1.3
09_02_0085 + 4111333-4111492,4114766-4116044,4116113-4116206,411... 30 1.7
02_02_0238 + 8163922-8164362,8165008-8165118,8165205-8165249,816... 29 3.0
11_06_0352 + 22599918-22600354,22601231-22601330 29 5.2
04_04_1677 + 35306232-35306328,35306697-35307248,35307324-353076... 29 5.2
03_05_0618 + 26177743-26178420,26179477-26179617 29 5.2
12_02_0340 - 17725866-17725884,17726046-17726326,17726842-177269... 28 6.9
08_02_1559 - 27873345-27873407,27873549-27873830,27874162-278742... 28 6.9
07_01_0072 - 525351-525494,526029-526256,526345-526458,527616-52... 28 6.9
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783... 28 6.9
02_04_0344 - 22171401-22171448,22171725-22171760,22171996-221720... 28 6.9
07_03_1214 + 24931142-24932314,24934177-24934434 28 9.1
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 111 bits (266), Expect = 8e-25
Identities = 49/63 (77%), Positives = 55/63 (87%)
Frame = -3
Query: 748 WARWDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSTEGELDEE 569
++R DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG + + E D+
Sbjct: 388 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGADDENDDG 447
Query: 568 NEY 560
+Y
Sbjct: 448 EDY 450
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 109 bits (262), Expect = 2e-24
Identities = 51/64 (79%), Positives = 57/64 (89%), Gaps = 1/64 (1%)
Frame = -3
Query: 748 WARWDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSTEGE-LDE 572
++R DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG +S E E D+
Sbjct: 388 FSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESDENEDGDD 447
Query: 571 ENEY 560
+EY
Sbjct: 448 GDEY 451
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 105 bits (252), Expect = 4e-23
Identities = 49/63 (77%), Positives = 55/63 (87%)
Frame = -3
Query: 748 WARWDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSTEGELDEE 569
++R D KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG + E + +E+
Sbjct: 469 FSRIDRKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE-VEDDDEEQ 527
Query: 568 NEY 560
EY
Sbjct: 528 GEY 530
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 104 bits (249), Expect = 9e-23
Identities = 50/64 (78%), Positives = 56/64 (87%), Gaps = 1/64 (1%)
Frame = -3
Query: 748 WARWDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSTEG-ELDE 572
++R D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG + +G E DE
Sbjct: 388 FSRIDIKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGSEFDDGDEGDE 447
Query: 571 ENEY 560
+EY
Sbjct: 448 GDEY 451
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 55.6 bits (128), Expect = 4e-08
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Frame = -3
Query: 742 RWDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV--GVDSTEGELDEE 569
R +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ EGE ++E
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADDEGEYEDE 439
Query: 568 NE 563
E
Sbjct: 440 EE 441
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 54.8 bits (126), Expect = 7e-08
Identities = 25/60 (41%), Positives = 38/60 (63%)
Frame = -3
Query: 742 RWDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSTEGELDEENE 563
R +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ D+T E D E E
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQY-QDATAEEEDYEEE 438
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 54.8 bits (126), Expect = 7e-08
Identities = 24/60 (40%), Positives = 38/60 (63%)
Frame = -3
Query: 742 RWDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSTEGELDEENE 563
R +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ D+T E + E E
Sbjct: 560 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY-QDATADEAEYEEE 618
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 54.8 bits (126), Expect = 7e-08
Identities = 22/60 (36%), Positives = 38/60 (63%)
Frame = -3
Query: 742 RWDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSTEGELDEENE 563
R +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ + + E ++E E
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEEYEDEEE 439
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 54.8 bits (126), Expect = 7e-08
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = -3
Query: 742 RWDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGVDSTEGELDE 572
R +F M+ ++AF+HWY GEGM+E EF+EA DL A + Y++ D E + +
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADDEEEDYGD 439
Query: 571 ENE 563
E E
Sbjct: 440 EEE 442
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 54.8 bits (126), Expect = 7e-08
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = -3
Query: 742 RWDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSTEGELDEENE 563
R +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ D+T DEE E
Sbjct: 401 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY-QDAT---ADEEGE 456
Query: 562 Y 560
Y
Sbjct: 457 Y 457
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 54.4 bits (125), Expect = 9e-08
Identities = 23/60 (38%), Positives = 38/60 (63%)
Frame = -3
Query: 742 RWDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSTEGELDEENE 563
R +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ + + E D E+E
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGDYEDE 439
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 53.6 bits (123), Expect = 2e-07
Identities = 21/60 (35%), Positives = 38/60 (63%)
Frame = -3
Query: 742 RWDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSTEGELDEENE 563
R +F M+ ++AF+HWY EGM+E EF+EA ++ L +Y++ + E + DE+++
Sbjct: 396 RVSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLVAEYQQYQDATAEDDYDEDDD 455
>01_06_1014 - 33810112-33811995
Length = 627
Score = 31.5 bits (68), Expect = 0.74
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 712 AKRAFVHWYVGEGMEEGEFSEAREDL 635
+KRA +HW++GEG+ ++ ED+
Sbjct: 187 SKRAMIHWWIGEGLVAATRNQTAEDV 212
>12_02_0885 +
23994354-23994584,23994987-23995342,23995549-23995663,
23995918-23995962,23996151-23996333,23996802-23996978,
23997345-23997476,23997587-23997766,23999116-23999247,
24000212-24000280,24000377-24000490,24000579-24000806,
24001343-24001486
Length = 701
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Frame = -3
Query: 670 EEGEFSEAREDLAALEKDYEEVGVDSTEG---ELDEENEY 560
+E E+SE+ + + E + E++ T+G ELDEE+EY
Sbjct: 599 QENEYSESEREESEYETEGEDIEHSPTQGREDELDEEDEY 638
>09_02_0085 +
4111333-4111492,4114766-4116044,4116113-4116206,
4116297-4116545
Length = 593
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/69 (26%), Positives = 35/69 (50%)
Frame = +3
Query: 210 LIFALLRTHSKYKNIG*NLCFQIDKTLRRIDHH*RTADGIRNND*KKYVSDHDVVNTQTL 389
+ F + R H KYK + +C + K+ R + G + D + DH ++ +TL
Sbjct: 459 VFFRVFRHHDKYKLL---MCTDLTKSSTRAGVYKPAYGGFVDMD----IDDHKTISLRTL 511
Query: 390 IDNSIHKTY 416
ID+S+ +++
Sbjct: 512 IDHSVVESF 520
>02_02_0238 +
8163922-8164362,8165008-8165118,8165205-8165249,
8166066-8166138,8166215-8166327,8166430-8166489,
8167287-8167334,8167422-8167490,8167618-8167679,
8167771-8167828
Length = 359
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = -3
Query: 655 SEAREDLAALEKDYEEVGVDSTEGELDEENEY*SGMKNSRSVLGRKEPNSYRYLKST 485
+EA + +E EE E E +EE EY S M+ ++ + P + ++ S+
Sbjct: 26 AEAEAKVVDVEGKEEEEEAAKVEEEEEEEREYKSDMRKLEELMSKLNPRAQEFVPSS 82
>11_06_0352 + 22599918-22600354,22601231-22601330
Length = 178
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +2
Query: 632 CQVLAGFGELPLLHTLTHVPVHECALSVHQVELVVPS 742
C +A GE H L VPV C H V + P+
Sbjct: 57 CSTMAANGESTRWHALLPVPVWHCVAEAHLVRIEHPN 93
>04_04_1677 +
35306232-35306328,35306697-35307248,35307324-35307608,
35308035-35308296,35308378-35308430,35308520-35308587,
35310331-35310420,35310502-35310586,35310822-35311254,
35312872-35313439,35313527-35314000
Length = 988
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 688 YVGEGMEEGEFSEAREDLAALEKDYEEVGVDSTEGELDEENE 563
+ G +G+ S + A K ++E+GV EG LD+E+E
Sbjct: 747 FSGHPKRKGDKSSSGRKGAPAGKGWQEIGVIEEEGLLDDEDE 788
>03_05_0618 + 26177743-26178420,26179477-26179617
Length = 272
Score = 28.7 bits (61), Expect = 5.2
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = -3
Query: 679 EGMEEGEFSEAREDLAALEKDYEEVGVDSTEGELDE---ENEY*SGMKN-SRSVLGRKEP 512
EG EEGE E E+ E+D EE G + E E DE + E S + N S+ G +P
Sbjct: 199 EGGEEGEGDEDDEEEGDEEED-EEEGEEEAEDEEDEAGADEEDESKVANGSKGSSGSAQP 257
Query: 511 N 509
N
Sbjct: 258 N 258
>12_02_0340 -
17725866-17725884,17726046-17726326,17726842-17726928,
17727018-17727113,17728484-17728585,17728720-17728762,
17728834-17728952,17729348-17729444,17730153-17730214,
17730370-17730432,17730847-17730949,17731402-17731497,
17731594-17731742,17732356-17732529,17733078-17733156,
17733807-17733913,17733994-17734062,17734879-17735043,
17735206-17735703
Length = 802
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 655 SEAREDLAALEKDYEEVGVDSTEGELDEENE 563
SE ED + +E D EE + EGE+D+E +
Sbjct: 78 SEGDEDDSEVEDDSEEDDKEVVEGEIDDEED 108
>08_02_1559 -
27873345-27873407,27873549-27873830,27874162-27874263,
27874402-27874872
Length = 305
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = -3
Query: 724 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSTEGELDEENE 563
D A A V W E +EG E E++ + + EE V S E E +E E
Sbjct: 63 DAAAAAEAGVEWSETEEADEGSQEEEEEEVVEEQAEAEEEVVASVEEEEEEAVE 116
>07_01_0072 -
525351-525494,526029-526256,526345-526458,527616-527747,
529086-529265,529376-529507,529879-530055,530536-530718,
530894-530938,531192-531306,531770-532128,532700-532939
Length = 682
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = -3
Query: 670 EEGEFSEAREDLAALEKDYEEVGVDSTEG---ELDEENEY 560
+ E+SE+ + + E + E++ T+G ELDEE+EY
Sbjct: 580 QANEYSESEREESEYETEGEDIEHSPTQGREDELDEEDEY 619
>04_04_1197 + 31672019-31672325,31672431-31672740,31673334-31678335,
31678677-31678715
Length = 1885
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 632 CQVLAGFGELPLLHTLTHVPVHEC 703
C LA L LHTL H+ VH C
Sbjct: 1707 CSSLATLEGLRFLHTLRHLKVHRC 1730
>02_04_0344 -
22171401-22171448,22171725-22171760,22171996-22172056,
22173246-22173304,22173384-22173497,22173575-22173646,
22173786-22173836,22173935-22174057,22175154-22175291
Length = 233
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 709 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSTEGELDEENE 563
+ +F W+ + E+ L +D +E G D+ EGE DEE E
Sbjct: 184 EESFFTWFTDTEHKSLADGVQDEEAEELGEDDDEEGSDADEGEEDEEEE 232
>07_03_1214 + 24931142-24932314,24934177-24934434
Length = 476
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = -3
Query: 682 GEGMEE---GEFSEAREDLAALEKDYEEVGVDSTEGELDEENE 563
GEG +E GE E E+ ++ YEE G D E ++D+E+E
Sbjct: 352 GEGEDEDENGEIGEEDEERLEDDRVYEE-GNDDDEEDVDDEDE 393
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,928,380
Number of Sequences: 37544
Number of extensions: 323149
Number of successful extensions: 811
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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