Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14e21
         (430 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-2305|AAN13731.1|   91|Drosophila melanogaster CG5184-PB...    31   0.50 
M23412-1|AAA28676.1|  788|Drosophila melanogaster protein ( Dros...    28   6.1  
AE013599-3856|AAM68310.1|  805|Drosophila melanogaster CG4356-PB...    28   6.1  
AE013599-3855|AAF47197.1|  788|Drosophila melanogaster CG4356-PA...    28   6.1  
AE014297-420|AAF51901.1|  274|Drosophila melanogaster CG15591-PA...    27   8.1  

>AE014297-2305|AAN13731.1|   91|Drosophila melanogaster CG5184-PB,
           isoform B protein.
          Length = 91

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 113 CPMATFAKHPTTKLFVHKSDK 175
           CP ATFA HPTT+LF  +  K
Sbjct: 67  CPSATFAFHPTTQLFPSRITK 87


>M23412-1|AAA28676.1|  788|Drosophila melanogaster protein (
           Drosophila muscarinicacetylcholine receptor mRNA,
           complete cds. ).
          Length = 788

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 16  YLGIQTAFVN*SIISTDRYFSLTR 87
           YL    + +N  IIS DRYFS+TR
Sbjct: 185 YLASNASVLNLLIISFDRYFSVTR 208


>AE013599-3856|AAM68310.1|  805|Drosophila melanogaster CG4356-PB,
           isoform B protein.
          Length = 805

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 16  YLGIQTAFVN*SIISTDRYFSLTR 87
           YL    + +N  IIS DRYFS+TR
Sbjct: 185 YLASNASVLNLLIISFDRYFSVTR 208


>AE013599-3855|AAF47197.1|  788|Drosophila melanogaster CG4356-PA,
           isoform A protein.
          Length = 788

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 16  YLGIQTAFVN*SIISTDRYFSLTR 87
           YL    + +N  IIS DRYFS+TR
Sbjct: 185 YLASNASVLNLLIISFDRYFSVTR 208


>AE014297-420|AAF51901.1|  274|Drosophila melanogaster CG15591-PA
           protein.
          Length = 274

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -2

Query: 237 GAFLKIPIGFESSAVPL*Y*HLSDLCTKSLVVGCLAKV 124
           GA + IP+    + VPL Y  L+ L  K+L+V  LA V
Sbjct: 178 GAMIMIPLLLGGTIVPLAYGALAMLAGKALIVSKLALV 215


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,510,872
Number of Sequences: 53049
Number of extensions: 325025
Number of successful extensions: 773
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1334434944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)