Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14e19
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharo...    29   0.40 
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    29   0.53 
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    29   0.70 
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    27   2.8  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.8  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    26   3.7  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    26   4.9  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    26   4.9  
SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme Spa1|Schi...    25   8.6  

>SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
 Frame = -1

Query: 583 PPERRDKIKSALEEDYFLSPEQTEQYFQALSESSK--RWSGPGGTV--NRKELIDKQKEL 416
           P +R+ +++  +E    LS E+TE+YF+    +S+   W+ P   V  +R+EL  + +E 
Sbjct: 115 PLQRQVRVEGIIER---LSREETEEYFKTRPRNSRIGAWASPQSEVIADREELEKRVEEY 171

Query: 415 QQR 407
           +++
Sbjct: 172 KKK 174


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +1

Query: 238 DSTEMVSVLPIFQRLSPAQRQRCF---STCSILASLFVLLLCN 357
           D  E+V V   +  LSP+ R + +   + CS LA L+ LL+CN
Sbjct: 537 DLMEIVLVAFKYLHLSPSNRLQLWLKVAYCSALADLYELLMCN 579


>SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1079

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -1

Query: 436  IDKQKELQQRQKWLVNFSAQVAYHLCDYIAKGQKEMLVSNRLRSIADVVL 287
            +D+  E    Q  +  FSA V YHL D     QK++L   R  S +DV +
Sbjct: 894  VDRDAEDLAEQLGVKIFSANVIYHLFDAFTAHQKKILEQKREES-SDVAV 942


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -1

Query: 508 YFQALSESSKR--WSGPGGTVNRKEL-IDKQKELQQRQKWLVNFSAQVAYH 365
           Y   L E+ +R  W       +   L +D++KEL  R+ WL +FS  +  H
Sbjct: 362 YIDILMEALRRTEWQESYNVSHDSSLPLDQEKELSLRKSWLSHFSNLLFNH 412


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 454 VNRKELIDKQKELQQRQKWLVNFSAQVAYHLCDYI 350
           VN+   I K+K L+ R K L++  + V +HL  +I
Sbjct: 121 VNKLIPIPKKKVLKNRAKSLLSIKSHVHFHLIPFI 155


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 163 ADALEALEYDGHDEHMRLDAEKPFF*MKLIRDRYEKRLS 47
           +DAL+ + Y    +   LDAEK  F +++  D+  K LS
Sbjct: 40  SDALDKIRYQSLSDPHALDAEKDLF-IRITPDKENKILS 77


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 256 KPSRSNPGRLARFMVAISDRIAVWIENAV 170
           KP+RS   RL    V   D   +WI N V
Sbjct: 167 KPARSKHCRLCNICVEKFDHHCIWINNCV 195


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 8/43 (18%)
 Frame = -1

Query: 160 DALEALEYDGHDEHMR---LD-----AEKPFF*MKLIRDRYEK 56
           D+LE+LE    DE ++   LD     ++ P F M++  DR+EK
Sbjct: 658 DSLESLELGHEDEQVQKGPLDVDMDHSQTPLFEMRVFHDRFEK 700


>SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme
           Spa1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 355 NHTSGMPPVR*N*PAISVVAEALFVYRSTPCG 450
           NHT G    R N  A+    + +FVY STP G
Sbjct: 33  NHTHGR---RRNTLALCTTKDQMFVYGSTPAG 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,345,159
Number of Sequences: 5004
Number of extensions: 45925
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)