Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14e19
(607 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006539-3|AAD14472.1| 498|Homo sapiens BC39498_1 protein. 33 0.78
AC006539-1|AAD14471.1| 78|Homo sapiens BC39498_3 protein. 33 0.78
D86976-1|BAA13212.1| 1165|Homo sapiens KIAA0223 protein. 31 2.4
AF308066-1|AAN04658.1| 1136|Homo sapiens minor histocompatibilit... 31 2.4
AC004151-1|AAC03237.1| 996|Homo sapiens D1013901 protein. 31 2.4
BC065223-1|AAH65223.1| 1136|Homo sapiens histocompatibility (min... 31 3.1
BC035564-1|AAH35564.1| 1131|Homo sapiens HMHA1 protein protein. 31 3.1
BC114940-1|AAI14941.1| 831|Homo sapiens prickle homolog 1 (Dros... 30 5.5
BC114939-1|AAI14940.1| 831|Homo sapiens prickle homolog 1 (Dros... 30 5.5
BC037312-1|AAH37312.1| 517|Homo sapiens ATF7IP protein protein. 30 5.5
AK056499-1|BAB71198.1| 831|Homo sapiens protein ( Homo sapiens ... 30 5.5
AF399844-1|AAQ03035.1| 831|Homo sapiens REST/NRSF-interacting l... 30 5.5
BC063855-1|AAH63855.1| 1105|Homo sapiens ATF7IP protein protein. 30 7.3
AY337596-1|AAQ92978.1| 1270|Homo sapiens SETDB1-associated prote... 30 7.3
AK001001-1|BAA91461.1| 131|Homo sapiens protein ( Homo sapiens ... 30 7.3
AF425650-1|AAO91864.1| 1270|Homo sapiens MBD1-containing chromat... 30 7.3
BC066650-1|AAH66650.1| 874|Homo sapiens coatomer protein comple... 29 9.6
BC020498-1|AAH20498.2| 699|Homo sapiens COPG protein protein. 29 9.6
AF100756-1|AAD43020.1| 874|Homo sapiens coat protein gamma-cop ... 29 9.6
AB047846-1|BAB17657.1| 874|Homo sapiens gamma1-COP protein. 29 9.6
>AC006539-3|AAD14472.1| 498|Homo sapiens BC39498_1 protein.
Length = 498
Score = 33.1 bits (72), Expect = 0.78
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = -1
Query: 562 IKSALEEDYFLSPEQTEQYFQALSESSKRWSGPGGTVNRKELIDKQKELQQRQK-WLVNF 386
I+ +LEE FL+P Q Y + + E+ + G TV++ ELI + L+QRQ+ W V
Sbjct: 11 IEFSLEEWEFLNPAQQSLYRKVMLENYRNLVSLGLTVSKPELISR---LEQRQEPWNVKR 67
Query: 385 SAQVA 371
+A
Sbjct: 68 HETIA 72
>AC006539-1|AAD14471.1| 78|Homo sapiens BC39498_3 protein.
Length = 78
Score = 33.1 bits (72), Expect = 0.78
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = -1
Query: 562 IKSALEEDYFLSPEQTEQYFQALSESSKRWSGPGGTVNRKELIDKQKELQQRQK-WLVNF 386
I+ +LEE FL+P Q Y + + E+ + G TV++ ELI + L+QRQ+ W V
Sbjct: 11 IEFSLEEWEFLNPAQQSLYRKVMLENYRNLVSLGLTVSKPELISR---LEQRQEPWNVKR 67
Query: 385 SAQVA 371
+A
Sbjct: 68 HETIA 72
>D86976-1|BAA13212.1| 1165|Homo sapiens KIAA0223 protein.
Length = 1165
Score = 31.5 bits (68), Expect = 2.4
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = -1
Query: 511 QYFQALSESSKRWSGPGGTVNRKELIDKQKELQQRQKWLVNFSAQVAYHLCDYIAKGQKE 332
++ A +E + S PG + +DK++ L++ K A Y C AK QK+
Sbjct: 449 RFLVAKAEEEQAGSAPGAGSTATKTLDKRRRLEEEAKNKAE-EAMATYRTCVADAKTQKQ 507
Query: 331 MLVSNR---LRSIADVV 290
L + LR I +V+
Sbjct: 508 ELEDTKVTALRQIQEVI 524
>AF308066-1|AAN04658.1| 1136|Homo sapiens minor histocompatibility
antigen HA-1 protein.
Length = 1136
Score = 31.5 bits (68), Expect = 2.4
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = -1
Query: 511 QYFQALSESSKRWSGPGGTVNRKELIDKQKELQQRQKWLVNFSAQVAYHLCDYIAKGQKE 332
++ A +E + S PG + +DK++ L++ K A Y C AK QK+
Sbjct: 420 RFLVAKAEEEQAGSAPGAGSTATKTLDKRRRLEEEAKNKAE-EAMATYRTCVADAKTQKQ 478
Query: 331 MLVSNR---LRSIADVV 290
L + LR I +V+
Sbjct: 479 ELEDTKVTALRQIQEVI 495
>AC004151-1|AAC03237.1| 996|Homo sapiens D1013901 protein.
Length = 996
Score = 31.5 bits (68), Expect = 2.4
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = -1
Query: 511 QYFQALSESSKRWSGPGGTVNRKELIDKQKELQQRQKWLVNFSAQVAYHLCDYIAKGQKE 332
++ A +E + S PG + +DK++ L++ K A Y C AK QK+
Sbjct: 280 RFLVAKAEEEQAGSAPGAGSTATKTLDKRRRLEEEAKNKAE-EAMATYRTCVADAKTQKQ 338
Query: 331 MLVSNR---LRSIADVV 290
L + LR I +V+
Sbjct: 339 ELEDTKVTALRQIQEVI 355
>BC065223-1|AAH65223.1| 1136|Homo sapiens histocompatibility (minor)
HA-1 protein.
Length = 1136
Score = 31.1 bits (67), Expect = 3.1
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = -1
Query: 511 QYFQALSESSKRWSGPGGTVNRKELIDKQKELQQRQKWLVNFSAQVAYHLCDYIAKGQKE 332
++ A +E + S PG + +DK++ L++ K A Y C AK QK+
Sbjct: 420 RFLVAKAEEEQAGSAPGAGGTATKTLDKRRRLEEEAKNKAE-EAMATYRTCVADAKTQKQ 478
Query: 331 MLVSNR---LRSIADVV 290
L + LR I +V+
Sbjct: 479 ELEDTKVTALRQIQEVI 495
>BC035564-1|AAH35564.1| 1131|Homo sapiens HMHA1 protein protein.
Length = 1131
Score = 31.1 bits (67), Expect = 3.1
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = -1
Query: 511 QYFQALSESSKRWSGPGGTVNRKELIDKQKELQQRQKWLVNFSAQVAYHLCDYIAKGQKE 332
++ A +E + S PG + +DK++ L++ K A Y C AK QK+
Sbjct: 415 RFLVAKAEEEQAGSAPGAGGTATKTLDKRRRLEEEAKNKAE-EAMATYRTCVADAKTQKQ 473
Query: 331 MLVSNR---LRSIADVV 290
L + LR I +V+
Sbjct: 474 ELEDTKVTALRQIQEVI 490
>BC114940-1|AAI14941.1| 831|Homo sapiens prickle homolog 1
(Drosophila) protein.
Length = 831
Score = 30.3 bits (65), Expect = 5.5
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = -1
Query: 532 LSPEQTEQYFQALSESSKRW-SGPGGTVNRKELIDKQKELQQRQKWLVNFSAQVAYHLCD 356
L PEQ + YF L E + + PG K+L+ + ++ + S + L
Sbjct: 40 LRPEQIQLYFACLPEEKVPYVNSPGEKHRIKQLLYQLPPHDNEVRYCQSLSEEEKKELQV 99
Query: 355 YIAKGQKEMLVSNRLRSIADVVLERVAEILG 263
+ A+ +KE L ++ ++ V+ V E G
Sbjct: 100 FSAQRKKEALGRGTIKLLSRAVMHAVCEQCG 130
>BC114939-1|AAI14940.1| 831|Homo sapiens prickle homolog 1
(Drosophila) protein.
Length = 831
Score = 30.3 bits (65), Expect = 5.5
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = -1
Query: 532 LSPEQTEQYFQALSESSKRW-SGPGGTVNRKELIDKQKELQQRQKWLVNFSAQVAYHLCD 356
L PEQ + YF L E + + PG K+L+ + ++ + S + L
Sbjct: 40 LRPEQIQLYFACLPEEKVPYVNSPGEKHRIKQLLYQLPPHDNEVRYCQSLSEEEKKELQV 99
Query: 355 YIAKGQKEMLVSNRLRSIADVVLERVAEILG 263
+ A+ +KE L ++ ++ V+ V E G
Sbjct: 100 FSAQRKKEALGRGTIKLLSRAVMHAVCEQCG 130
>BC037312-1|AAH37312.1| 517|Homo sapiens ATF7IP protein protein.
Length = 517
Score = 30.3 bits (65), Expect = 5.5
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +1
Query: 223 LLDVLDSTEMVSVLPIFQRLSPAQRQ-RCFSTCSIL 327
+L+ DS E ++PI ++L+P++ + CFS S+L
Sbjct: 423 ILENTDSMETDEIIPILEKLAPSEDELTCFSKTSVL 458
>AK056499-1|BAB71198.1| 831|Homo sapiens protein ( Homo sapiens
cDNA FLJ31937 fis, clone NT2RP7006527, moderately
similar to LIM-ONLY PROTEIN 6. ).
Length = 831
Score = 30.3 bits (65), Expect = 5.5
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = -1
Query: 532 LSPEQTEQYFQALSESSKRW-SGPGGTVNRKELIDKQKELQQRQKWLVNFSAQVAYHLCD 356
L PEQ + YF L E + + PG K+L+ + ++ + S + L
Sbjct: 40 LRPEQIQLYFACLPEEKVPYVNSPGEKHRIKQLLYQLPPHDNEVRYCQSLSEEEKKELQV 99
Query: 355 YIAKGQKEMLVSNRLRSIADVVLERVAEILG 263
+ A+ +KE L ++ ++ V+ V E G
Sbjct: 100 FSAQRKKEALGRGTIKLLSRAVMHAVCEQCG 130
>AF399844-1|AAQ03035.1| 831|Homo sapiens REST/NRSF-interacting lim
domain protein protein.
Length = 831
Score = 30.3 bits (65), Expect = 5.5
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = -1
Query: 532 LSPEQTEQYFQALSESSKRW-SGPGGTVNRKELIDKQKELQQRQKWLVNFSAQVAYHLCD 356
L PEQ + YF L E + + PG K+L+ + ++ + S + L
Sbjct: 40 LRPEQIQLYFACLPEEKVPYVNSPGEKHRIKQLLYQLPPHDNEVRYCQSLSEEEKKELQV 99
Query: 355 YIAKGQKEMLVSNRLRSIADVVLERVAEILG 263
+ A+ +KE L ++ ++ V+ V E G
Sbjct: 100 FSAQRKKEALGRGTIKLLSRAVMHAVCEQCG 130
>BC063855-1|AAH63855.1| 1105|Homo sapiens ATF7IP protein protein.
Length = 1105
Score = 29.9 bits (64), Expect = 7.3
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +1
Query: 223 LLDVLDSTEMVSVLPIFQRLSPAQRQ-RCFSTCSIL 327
+L+ DS E ++PI ++L+P++ + CFS S+L
Sbjct: 423 ILENTDSMETDEIIPILEKLAPSEDELTCFSKTSLL 458
>AY337596-1|AAQ92978.1| 1270|Homo sapiens SETDB1-associated protein
protein.
Length = 1270
Score = 29.9 bits (64), Expect = 7.3
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +1
Query: 223 LLDVLDSTEMVSVLPIFQRLSPAQRQ-RCFSTCSIL 327
+L+ DS E ++PI ++L+P++ + CFS S+L
Sbjct: 423 ILENTDSMETDEIIPILEKLAPSEDELTCFSKTSLL 458
>AK001001-1|BAA91461.1| 131|Homo sapiens protein ( Homo sapiens
cDNA FLJ10139 fis, clone HEMBA1003175. ).
Length = 131
Score = 29.9 bits (64), Expect = 7.3
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +1
Query: 223 LLDVLDSTEMVSVLPIFQRLSPAQRQ-RCFSTCSIL 327
+L+ DS E ++PI ++L+P++ + CFS S+L
Sbjct: 34 ILENTDSMETDEIIPILEKLAPSEDELTCFSKTSLL 69
>AF425650-1|AAO91864.1| 1270|Homo sapiens MBD1-containing chromatin
associated factor protein.
Length = 1270
Score = 29.9 bits (64), Expect = 7.3
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +1
Query: 223 LLDVLDSTEMVSVLPIFQRLSPAQRQ-RCFSTCSIL 327
+L+ DS E ++PI ++L+P++ + CFS S+L
Sbjct: 423 ILENTDSMETDEIIPILEKLAPSEDELTCFSKTSLL 458
>BC066650-1|AAH66650.1| 874|Homo sapiens coatomer protein complex,
subunit gamma protein.
Length = 874
Score = 29.5 bits (63), Expect = 9.6
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = -1
Query: 295 VVLERVAEILGEPKPSRSNPGRLARFMVAISDRIAVWIENAVYRADALEAL-EYDGHDEH 119
V+ R+ +LG+ P +NP + RF I +R+ +E+ RA A+ AL ++ +E
Sbjct: 450 VLATRILHLLGQEGPKTTNPSKYIRF---IYNRVV--LEHEEVRAGAVSALAKFGAQNEE 504
Query: 118 M 116
M
Sbjct: 505 M 505
>BC020498-1|AAH20498.2| 699|Homo sapiens COPG protein protein.
Length = 699
Score = 29.5 bits (63), Expect = 9.6
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = -1
Query: 295 VVLERVAEILGEPKPSRSNPGRLARFMVAISDRIAVWIENAVYRADALEAL-EYDGHDEH 119
V+ R+ +LG+ P +NP + RF I +R+ +E+ RA A+ AL ++ +E
Sbjct: 275 VLATRILHLLGQEGPKTTNPSKYIRF---IYNRVV--LEHEEVRAGAVSALAKFGAQNEE 329
Query: 118 M 116
M
Sbjct: 330 M 330
>AF100756-1|AAD43020.1| 874|Homo sapiens coat protein gamma-cop
protein.
Length = 874
Score = 29.5 bits (63), Expect = 9.6
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = -1
Query: 295 VVLERVAEILGEPKPSRSNPGRLARFMVAISDRIAVWIENAVYRADALEAL-EYDGHDEH 119
V+ R+ +LG+ P +NP + RF I +R+ +E+ RA A+ AL ++ +E
Sbjct: 450 VLATRILHLLGQEGPKTTNPSKYIRF---IYNRVV--LEHEEVRAGAVSALAKFGAQNEE 504
Query: 118 M 116
M
Sbjct: 505 M 505
>AB047846-1|BAB17657.1| 874|Homo sapiens gamma1-COP protein.
Length = 874
Score = 29.5 bits (63), Expect = 9.6
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = -1
Query: 295 VVLERVAEILGEPKPSRSNPGRLARFMVAISDRIAVWIENAVYRADALEAL-EYDGHDEH 119
V+ R+ +LG+ P +NP + RF I +R+ +E+ RA A+ AL ++ +E
Sbjct: 450 VLATRILHLLGQEGPKTTNPSKYIRF---IYNRVV--LEHEEVRAGAVSALAKFGAQNEE 504
Query: 118 M 116
M
Sbjct: 505 M 505
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,517,997
Number of Sequences: 237096
Number of extensions: 1629655
Number of successful extensions: 3842
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3842
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6410414940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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