Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14e19
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81082-5|CAB03093.2|  429|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z22181-7|CAA80189.2|   62|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U13070-7|AAC46638.1|  414|Caenorhabditis elegans Rabaptin (rab e...    27   7.9  

>Z81082-5|CAB03093.2|  429|Caenorhabditis elegans Hypothetical
           protein F42G4.2 protein.
          Length = 429

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 347 KRTKRDASIEQVEKHR*RCAGESR*NIGRTETISVESRTSSK 222
           K T+R   + + EK + + A   +     T+T+S+E RTSS+
Sbjct: 86  KATRRKERVVEKEKEQPKTATIRKKKQSATQTVSIEHRTSSE 127


>Z22181-7|CAA80189.2|   62|Caenorhabditis elegans Hypothetical
           protein ZK632.9 protein.
          Length = 62

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = -3

Query: 419 ASATTEMAG*FQRTGGIPLV*LHSKRTKRDASIEQVEKHR*RCAGESR 276
           +S   EMA  F++TGG  L     KRTK D  +E   KH  +  G++R
Sbjct: 2   SSTAEEMAAAFEQTGGPDLTTGSGKRTKSD-RVE--HKHASQPGGDTR 46


>U13070-7|AAC46638.1|  414|Caenorhabditis elegans Rabaptin (rab
           effector) protein 5 protein.
          Length = 414

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 384 LKLTSHFCRC*SSFCLSINSLRFTVPPGPDQR 479
           +K+  H   C   FC+  N L+ TVP GP+ R
Sbjct: 360 VKVKPHCLHCGRIFCM--NCLKDTVPSGPNHR 389


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,130,794
Number of Sequences: 27780
Number of extensions: 262170
Number of successful extensions: 754
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)