Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14e17
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces...    41   1e-04
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    26   3.1  
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    26   4.1  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    26   4.1  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    26   4.1  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    25   5.5  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    25   5.5  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    25   7.2  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   9.5  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    25   9.5  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    25   9.5  

>SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
 Frame = -2

Query: 445 DIQ-HFSPDDITVKIVDGFVVVEALHEEKQDQHGWVSRRF---TRRCPIPEXXDTDAVES 278
           D+Q H+    +T+    G VV E  +E  +    W  RRF   +R   IP   D D +E+
Sbjct: 61  DVQVHYDSGKLTIS---GEVVNERKNESTEGNQRWSERRFGSFSRTITIPAKIDADRIEA 117

Query: 277 RLSSDGVLTVSMPLQRRISNERRVPI 200
              S+G+LTV++P   +   ++++ I
Sbjct: 118 NF-SNGLLTVTLPKVEKSQTKKQIAI 142


>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = -3

Query: 537 KYPGANFHGGS--QDCVREVRLRRINLNSRSIWXXXXXXXXXXXXXLSMASSSWK--LFT 370
           +Y    F  GS  ++C R   L  + LNSR  W              S A S++K  L  
Sbjct: 131 RYQEVAFTAGSILRECSRHEALNEVLLNSRDFWTFFSLIQASSFDMASDAFSTFKSILLN 190

Query: 369 KKSRIS 352
            KS+++
Sbjct: 191 HKSQVA 196


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 235 QRRISNERRVPIIQTGPVKISDEPKPECVDSIETPPANGE 116
           Q  +S++ ++  I+ G  ++ +EP  E   S   PP N E
Sbjct: 286 QDTVSDKNQIDEIEKGQKEVDEEPVSEPTTSPILPPKNQE 325


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -2

Query: 241 PLQRRIS--NERRVPIIQTGPVKISDEP 164
           PLQR ++  N+ + PI   GP  + DEP
Sbjct: 231 PLQRHVATLNQYQSPIFNLGPDILEDEP 258


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1250

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -2

Query: 505  PGLREGSSIKKDKS--KFQINLDIQHFSPDDITVKIVDGFVVVEALHEEKQDQHGWVSRR 332
            PG+    SI    S  K  IN  I+    D  TV+I +G  V+E +HE  Q +   +S  
Sbjct: 1124 PGVVAMKSISDHGSHCKSYINPPIEQIVHDIPTVRISNGKDVIENIHEGDQAE---ISFH 1180

Query: 331  FTRRCP 314
            FT   P
Sbjct: 1181 FTGTPP 1186


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 374 KSFHDDEAIDNFHSNVVRRKVLNVQI 451
           +SF +DE I    SNVVR K   V I
Sbjct: 323 ESFSEDENISTGTSNVVRNKPTTVNI 348


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 298 DTDAVESRLSSDGVLTVSMPLQRRISNERRVP 203
           D+  +ESR S +  L  S  +QR IS E   P
Sbjct: 15  DSTIIESRYSPEEYLEQSFEIQRIISGENSEP 46


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +2

Query: 158 WLRLIGYLHRTSLYDGHSALVRD 226
           W++++GY+    +Y+G   L  D
Sbjct: 49  WIQIVGYIAAIDIYEGKHVLTVD 71


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -2

Query: 310 PEXXDTDAVESRLSSDGVLTVSMPLQRRISNERRVPIIQTGPVKISDEPKPE-CVDSI 140
           PE  D   VE   +S+G  T S+      ++ +R  +     + +   PK E C++S+
Sbjct: 739 PEVVDKTKVEKLKASEGKSTSSLSSPSHSTSSKRDLLSGLESLSLKTNPKSEQCLESL 796


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 392 EAIDNFHSNVVRRKVLNVQIDLEFRFILLNR 484
           ++IDNF   ++R    +  +DL  +FI ++R
Sbjct: 157 QSIDNFVEKILRHAETSAIMDLLLKFISMDR 187


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 347 AVLILLFFVKSFHDDEAIDNFHSNVVRRKVLNVQIDLEFRFIL 475
           AVL +   VK   D   +  FH+N +  K   +Q+   FRF L
Sbjct: 533 AVLCIQKDVKDNFDSAVLPVFHANQMFIKKHRLQLQKHFRFEL 575


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,263,039
Number of Sequences: 5004
Number of extensions: 44083
Number of successful extensions: 139
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)