Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14e17
(542 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0365 - 16818468-16818514,16818619-16821706,16822860-168229... 34 0.084
11_08_0069 + 28148713-28148829,28149205-28149327,28149372-28149824 30 1.0
07_03_1085 - 23851852-23853165 30 1.4
02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657 30 1.4
11_06_0506 - 24380469-24380632,24381737-24383893,24384488-243845... 29 1.8
04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680 29 1.8
02_02_0061 + 6468190-6471046,6471318-6471736 29 2.4
01_05_0777 + 25110356-25110662,25112569-25112789,25112880-251131... 29 2.4
01_06_0390 - 28938485-28938751,28939924-28941282 29 3.2
01_05_0776 + 25072541-25073080,25073174-25073418,25073558-250739... 29 3.2
10_04_0018 - 7633860-7634134,7634525-7634858 28 4.2
03_05_0830 + 28034179-28035492 28 4.2
03_01_0605 - 4453409-4453692,4454541-4454594,4454706-4454812,445... 28 4.2
01_06_0866 - 32572002-32572541,32572806-32572984,32574330-325744... 28 5.5
12_02_0046 + 12830974-12832386 27 7.3
08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462... 27 7.3
01_05_0594 - 23506423-23506767,23507004-23507153,23507264-23508325 27 9.7
>11_04_0365 - 16818468-16818514,16818619-16821706,16822860-16822919,
16823595-16823954
Length = 1184
Score = 33.9 bits (74), Expect = 0.084
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 204 GTLRSLEIRRCKGMDTVRTPSEEXXXXXXXXXXXXGIG-QRRVNRRDTQPC 353
GTLR LEIR C G+ T+RT +G ++N+ D Q C
Sbjct: 918 GTLRDLEIRVCNGLHTIRTQPALLIMWLYDCPKLGAVGTMPKLNKLDIQKC 968
>11_08_0069 + 28148713-28148829,28149205-28149327,28149372-28149824
Length = 230
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 153 ALILLKRRQQTENKLSQAHRQLPSAVYESIYVG 55
A L++R++ KLS +LPS +Y SI++G
Sbjct: 47 ACALMRRKKTHRTKLSLEKLRLPSLLYRSIFIG 79
>07_03_1085 - 23851852-23853165
Length = 437
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -2
Query: 499 LREGSSIKKDKSKFQINLDIQHFSPDDITVKIVDGFVVVEALHE--EKQDQHGWV 341
L G+ + +D + ++ +D + F P ++++ + D EAL+E E D+ G++
Sbjct: 94 LYTGTIVTEDGKEKKVTIDFEPFKPINVSLYLCDNKFHTEALNELLESDDKFGFI 148
>02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657
Length = 1136
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -2
Query: 424 DDITVKIVDGFVVVEALHEEKQDQHGWVSRRFTRRCPIPE--XXDTDAVESRLSSDGVLT 251
D V V F + LH+E + GW S R T PE + +++ + S G+L
Sbjct: 965 DSDMVAHVSDFGLARFLHQESEKSSGWASMRGTVGYAAPEYGIGNEVSIQGDVYSYGILL 1024
Query: 250 VSMPLQRRISNE 215
+ M ++R +++
Sbjct: 1025 LEMFTRKRPTDD 1036
>11_06_0506 - 24380469-24380632,24381737-24383893,24384488-24384541,
24384543-24384597,24384914-24384916,24385192-24385231,
24385576-24385632,24388124-24388412,24389764-24389771,
24390633-24390688,24391207-24391488,24391651-24391811,
24391887-24392121,24392860-24392943,24393022-24393117,
24393333-24394055,24396523-24396987
Length = 1642
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = -2
Query: 319 CPIPEXXDTDAVESRLSSDGVLTVSMPLQRRISNER----RVPIIQTGPVKISDEPKPE 155
C E TD+ +LSS + T SM ++R + N R I+ P+K++D + E
Sbjct: 1570 CCCGEQCSTDSHVKQLSSGAMSTSSMVIERSLDNAEDGFVRAATIELRPLKLADSLRKE 1628
>04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680
Length = 628
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = -2
Query: 226 ISNERRVPIIQTGPVKISD---EPKPECVDSIETPPANGE 116
+S+ER++P+ Q PV+ SD +P + S ET A E
Sbjct: 384 LSDERKIPVDQRSPVENSDSLSDPVDRALSSTETDGARNE 423
>02_02_0061 + 6468190-6471046,6471318-6471736
Length = 1091
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -2
Query: 424 DDITVKIVDGFVVVEALHEEKQDQHGWVSRRFTRRCPIPE--XXDTDAVESRLSSDGVLT 251
DD V V F + LH++ + GW S R T PE + ++ + S G+L
Sbjct: 914 DDEMVAHVGDFGLARFLHQDPEQSSGWASMRGTTGYAAPEYGLGNEVSIHGDVYSYGILL 973
Query: 250 VSM 242
+ M
Sbjct: 974 LEM 976
>01_05_0777 +
25110356-25110662,25112569-25112789,25112880-25113127,
25113274-25113664,25113751-25114155,25115260-25115366,
25115833-25116170,25116206-25116486,25116645-25116889,
25116998-25117382,25117459-25117884
Length = 1117
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = +1
Query: 229 GAVKAWTQLGLHQKRVWIPRRLCRXLRVSGSVV*TDGTPSRA 354
GAV AW + + W PRRL R LR G GTP R+
Sbjct: 23 GAVLAWCAVRAMEWAWWRPRRLERALRAQG----LRGTPYRS 60
>01_06_0390 - 28938485-28938751,28939924-28941282
Length = 541
Score = 28.7 bits (61), Expect = 3.2
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Frame = -2
Query: 370 EEKQDQHGWVSRRFTRRCPIPEXXDTDAVESRLSSD-----GVLTVSMPLQRRISNERRV 206
+E +HGWVS + T E + D VE +S L ++ +E
Sbjct: 268 DETAPKHGWVSPKSTLNAECWESDEDDEVEEGMSQSATKRISALAITCSALPDWDSEDGW 327
Query: 205 PIIQTGPVKISDEPKPECVDSIE 137
+Q+ P ++S+ P P V + +
Sbjct: 328 IDLQSDPSEVSETPAPMVVTTAD 350
>01_05_0776 +
25072541-25073080,25073174-25073418,25073558-25073942,
25074058-25074483
Length = 531
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +1
Query: 202 WALCAR*RFGAVKAWTQLGLHQKRVWIPRRLCRXLRVSG 318
W+L A G V W L + W PRRL R LR G
Sbjct: 16 WSLLAYGLVGPVLLWQAGRLLDRLWWRPRRLERALRAQG 54
>10_04_0018 - 7633860-7634134,7634525-7634858
Length = 202
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 369 KKSRISTAGCPVGSHDAARYPKXATQTPWNPDSLLMES*LCPCLY-SAESL 220
K T+GC + S D R + T + PD +L+E + L+ S ESL
Sbjct: 125 KNEEFRTSGCALDSRDDLRNDHENSLTDFPPDKVLIEDVMVVLLHESPESL 175
>03_05_0830 + 28034179-28035492
Length = 437
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = -2
Query: 499 LREGSSIKKDKSKFQINLDIQHFSPDDITVKIVDGFVVVEALHE--EKQDQHGWV 341
L G+ + +D + ++ +D + F P + ++ + D EAL+E E D+ G++
Sbjct: 94 LYTGTIVTEDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFI 148
>03_01_0605 -
4453409-4453692,4454541-4454594,4454706-4454812,
4454865-4454928,4456996-4457896
Length = 469
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 534 YPGANFHGGSQDCVREVRLRRINLNSRS 451
+ GA +G + DC RE+R R + N+R+
Sbjct: 204 FAGAGMNGEAWDCFREMRARGVRGNART 231
>01_06_0866 - 32572002-32572541,32572806-32572984,32574330-32574430,
32574554-32574887,32574915-32575037,32575193-32575394,
32575915-32576097,32576332-32576436,32576553-32576760,
32577025-32577170,32577321-32577443,32577490-32577698,
32577931-32578152,32578189-32578198,32578710-32578763,
32580841-32581052,32581620-32581772,32582071-32582158,
32582192-32582290,32582660-32582907,32584806-32585049
Length = 1260
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 51 RSRHK*IHKLHLAIGDAPVTAYSPFAGGVSIESTHSGFGSSD 176
R+ K + +L + +GD PF G++I S+ GF +D
Sbjct: 952 RTWFKSVDQLPMNVGDLHYDPLFPFGFGLTINSSQPGFSGAD 993
>12_02_0046 + 12830974-12832386
Length = 470
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/66 (21%), Positives = 28/66 (42%)
Frame = -2
Query: 280 SRLSSDGVLTVSMPLQRRISNERRVPIIQTGPVKISDEPKPECVDSIETPPANGE*AVTG 101
S+ + +T S P RR++ + P ++T P ++ + + + PP
Sbjct: 223 SKATRQSCVTASAPPPRRVAPQPAPPSLRTAPAAVAPPRQVPVITQQQAPPLKRPAPPVP 282
Query: 100 ASPIAK 83
+ P AK
Sbjct: 283 SPPCAK 288
>08_01_0533 +
4625376-4625709,4625799-4625966,4627428-4627689,
4627787-4627934,4628453-4628496,4628812-4628859,
4629245-4630509,4630741-4630839,4630916-4631097,
4631186-4631246,4631488-4631725,4631818-4631971,
4632042-4632335
Length = 1098
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 331 TDGTPS-RADPAFLREELPRRRSHRQFSQ*CRPEKSVECPN*SGI*IYPS 477
TD P+ + F E RR ++R F CR K++ C + + YPS
Sbjct: 633 TDAVPACKCLDGFEPREEERRTNNRSFLLGCRRRKALRCHHGNSFLTYPS 682
>01_05_0594 - 23506423-23506767,23507004-23507153,23507264-23508325
Length = 518
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = -2
Query: 289 AVESRLSSDGVLTVSMPLQRRISNERRVPIIQTGPVKISDEPKPECVDSIE 137
AVE S D ++ P R+ +P+ + P+KI P+ E + ++
Sbjct: 290 AVEWMSSLDEIVVDGAPCLERLLLHHAIPVAERTPIKIVSAPRLEVLGILD 340
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,275,867
Number of Sequences: 37544
Number of extensions: 312702
Number of successful extensions: 841
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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