Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14e17
         (542 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    25   0.66 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   1.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   3.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.6  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   4.6  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   6.1  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   8.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   8.1  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 15/64 (23%), Positives = 25/64 (39%)
 Frame = -2

Query: 313 IPEXXDTDAVESRLSSDGVLTVSMPLQRRISNERRVPIIQTGPVKISDEPKPECVDSIET 134
           +P      A++  +SS  V      ++  + N    P+        SDE   E +D  +T
Sbjct: 267 LPPVSYVKAIDVWMSSCSVFVFLSLMEFAVVNNYMGPVATKAMKGYSDEDLREAIDEFKT 326

Query: 133 PPAN 122
           P  N
Sbjct: 327 PMRN 330


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 159 QNALILLKRRQQTENKLSQAHRQLPSAVYESIYV 58
           QN L    R ++ + + SQ+  Q+P   +ES+ +
Sbjct: 425 QNILSYFLRYKKLQPQYSQSELQMPGVKFESVNI 458


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 184 VKISDEPKPECVDSIETPPANGE 116
           + ISD  KPE    I   P+N E
Sbjct: 546 LSISDSTKPETSKGINAEPSNIE 568


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +1

Query: 487 FPHAILAASMKIGSWIF 537
           FP+ +    +K+GSW +
Sbjct: 160 FPYDVQTCVLKLGSWTY 176


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 187 PVKISDEPKPECVDSIETPPANGE 116
           P K   E KPE VD+ +    NG+
Sbjct: 109 PTKSILEKKPELVDATDPGEHNGD 132


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -3

Query: 159 QNALILLKRRQQTENKLSQAHRQLPSAVYESIYV 58
           Q  L    R ++ + + SQ+  Q+P   +ES+ +
Sbjct: 425 QKILSYFLRYKKLQPQYSQSELQMPGVKFESVNI 458


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 283 ESRLSSDGVLTVSMPLQRRISNERRV 206
           +S + S   L   MP++R +  E+RV
Sbjct: 192 QSEVESTSSLHSDMPIERILEAEKRV 217


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 283 ESRLSSDGVLTVSMPLQRRISNERRV 206
           +S + S   L   MP++R +  E+RV
Sbjct: 192 QSEVESTSSLHSDMPIERILEAEKRV 217


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,907
Number of Sequences: 438
Number of extensions: 3335
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)