Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14e16
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    28   1.6  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    27   3.8  
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    27   3.8  
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe...    25   8.8  

>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 729 RXNFATVLLDDMIFVIGGFNGSTTIPLVECYDGDTLEW 616
           R N +  L+   IFV GG N +  +  +  +D +TL W
Sbjct: 248 RSNHSVTLVQGKIFVHGGHNDTGPLSDLWLFDLETLSW 285


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 533 EKERAFGKPARTQALSAERFKFIGAASYHSRVSP 634
           E  RAFG+ A+ Q L   + +    A  H R+SP
Sbjct: 57  EAARAFGREAQVQTLVRSQEETNSLAKRHKRMSP 90


>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 465 DFVIVRIEELDQHQRQAQLSPNKR 536
           D+V+VR+ E D+ QRQ  L  NKR
Sbjct: 52  DYVLVRVTEFDEVQRQGLL--NKR 73


>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 612 DAAPM-NLNRSALSACVLAGLPNARSFSYLAKA 517
           DA P+ NL+ +   A + + LP + SFS L +A
Sbjct: 141 DAVPLLNLSITTSGASISSSLPKSTSFSQLLRA 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,932,604
Number of Sequences: 5004
Number of extensions: 58619
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)