Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14e16
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0755 - 21261855-21261945,21262277-21262323,21262819-212630... 43 2e-04
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336... 38 0.006
02_03_0355 - 18058697-18059324,18059557-18060023 36 0.026
05_01_0471 - 3751497-3751522,3751760-3751800,3752466-3752507,375... 35 0.060
11_06_0321 - 22341267-22342565 30 1.7
06_03_0091 - 16515330-16515548,16515669-16515779,16517483-165175... 29 4.0
10_07_0162 - 13713504-13714754,13716445-13716522 29 5.2
10_06_0104 + 10786613-10788040 28 6.9
05_01_0543 - 4733239-4733704,4733805-4734190 28 6.9
11_06_0051 - 19645726-19646007,19646045-19646513,19647749-196477... 28 9.2
>07_03_0755 -
21261855-21261945,21262277-21262323,21262819-21263014,
21263239-21263340,21263602-21263678,21264037-21264236,
21264324-21264681,21265245-21265301,21265434-21266192,
21266287-21266468,21266651-21266813
Length = 743
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -2
Query: 708 LLDDMIFVIGGFN--GSTTIPLVECYDGDTLEWYDAAPMNLNRSALSACVLAG 556
+LDD IF IGG++ T + VE Y+ W A PMN NR S+ VL G
Sbjct: 628 VLDDKIFSIGGYDAEAKTMVATVELYEPRMPSWVMAEPMNYNRGYHSSAVLGG 680
Score = 36.3 bits (80), Expect = 0.026
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -2
Query: 717 ATVLLDDMIFVIGGFNGSTTIPLVECYDGDTLEWYDAAPMNLNRSALSACVLAG 556
+TV LD IFV+GG +G V+CYD +W ++ +L+A G
Sbjct: 484 STVALDGKIFVLGGGDGVCWFDTVDCYDRRRDDWTTCPSFTHDKGSLAAVSFNG 537
>01_01_0453 -
3361460-3361549,3361660-3361846,3362038-3362139,
3362239-3362306,3362976-3363175,3363253-3363595,
3363837-3363893,3364011-3364727,3364805-3365007,
3365171-3365297
Length = 697
Score = 38.3 bits (85), Expect = 0.006
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -2
Query: 741 MFSARXNFATVLLDDMIFVIGGFNG--STTIPLVECYDGDTLEWYDAAPMNLNRSALSAC 568
M SAR A L D +F+ GG+NG S VECY+ +W +N + L+
Sbjct: 450 MSSARAYAAVATLKDHVFIFGGWNGIRSLWYNTVECYNRGANKWIGLPCLNHEKGHLAGA 509
Query: 567 VLAG 556
L G
Sbjct: 510 TLNG 513
>02_03_0355 - 18058697-18059324,18059557-18060023
Length = 364
Score = 36.3 bits (80), Expect = 0.026
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -2
Query: 753 EVTEMFSARXNFATVLLDDMIFVIGGFN-GSTTIPLVECYDGDTLEWYDAAPMNLNRSAL 577
E+++M AR +FA ++ MI+V GGF ++ VE YD + +W + R
Sbjct: 159 ELSKMNVARCDFACAEVNGMIYVAGGFGPNGDSLSSVEVYDAEQNKWTLIESLRRPRWGC 218
Query: 576 SACVLAG 556
AC G
Sbjct: 219 FACSFEG 225
>05_01_0471 -
3751497-3751522,3751760-3751800,3752466-3752507,
3753249-3753310,3753398-3753584,3753692-3753826,
3753872-3753948,3754005-3754076,3754389-3754588,
3754675-3755020,3755463-3755519,3755655-3757433,
3757539-3757720,3757943-3758072
Length = 1111
Score = 35.1 bits (77), Expect = 0.060
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = -2
Query: 735 SARXNFATVLLDDMIFVIGGFNGSTTIPLVECYDGDTLEWYDAAPMNLNRSALSACVLAG 556
SAR + L+ IFV GG G + VECY+ EW +N + +L+A L G
Sbjct: 803 SARSYASVATLEGCIFVCGGGVGDSFGNTVECYNTMCNEWMACPCLNNKKGSLAAVSLDG 862
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -2
Query: 705 LDDMIFVIGGFNGSTTIPLVECYDGDTLEWYDAAPMNLNRSALSACVL 562
L +++ IGG+NG + VE +D W PMN R S L
Sbjct: 989 LGGVLYAIGGYNGDRMVSSVEIFDPRRNSWRVGDPMNFPRGYASTVTL 1036
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 693 IFVIGGFNGSTTIPLVECYDGDTLEWYDAAPMNLNRSALSACVLAG 556
IF+IGG+NG + + ++ + + AP++ RS S L G
Sbjct: 770 IFLIGGYNGVSWLSSLDAFSPEKDILVPLAPLSSARSYASVATLEG 815
>11_06_0321 - 22341267-22342565
Length = 432
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/62 (27%), Positives = 23/62 (37%)
Frame = -2
Query: 741 MFSARXNFATVLLDDMIFVIGGFNGSTTIPLVECYDGDTLEWYDAAPMNLNRSALSACVL 562
M S R F + + V GG + T+ E YD + W MN R S +
Sbjct: 220 MNSPRCLFGSASFGEKAIVAGGIGDNGTLSSAELYDSEAKTWTTLPSMNRARKMCSGFFM 279
Query: 561 AG 556
G
Sbjct: 280 DG 281
>06_03_0091 -
16515330-16515548,16515669-16515779,16517483-16517524,
16518067-16518181,16518820-16518914,16519916-16520015,
16521169-16521264,16522276-16522349,16524581-16524629,
16525414-16525483,16525553-16525652,16525721-16525779,
16526633-16526684,16527199-16527405
Length = 462
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 289 IYRKSYIQLKYH-RYLKQSHNYKKVTNTVDDFH 384
I++K+YI + H +LK+ NY T +++D H
Sbjct: 288 IFKKAYIIIPVHAEFLKEEWNYLNKTGSLEDCH 320
>10_07_0162 - 13713504-13714754,13716445-13716522
Length = 442
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -2
Query: 744 EMFSARXNFATVLLDDMIFVIGG-FNG-STTIPLVECYDGDTLEWYDAAPMN 595
+M R F + ++++ ++V GG G T+P E YD + W A MN
Sbjct: 216 DMLRKRHFFGSCVINNCLYVAGGECEGIQRTLPSAEVYDPNRNRWACVAEMN 267
>10_06_0104 + 10786613-10788040
Length = 475
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -2
Query: 693 IFVIGGFNGSTTIPLVECYDGDTLEWYDAAPMNLNRSALSACVL 562
I+V+GGF+ + + V YD W + + M+ R+ A +L
Sbjct: 187 IYVLGGFSRGSAMKCVWRYDPFVNAWQEVSSMSTGRAFCKASLL 230
>05_01_0543 - 4733239-4733704,4733805-4734190
Length = 283
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 681 GGFNGSTTIPLVECYDGDTLEWYDAAP 601
GG +G TT+ L Y G + W D AP
Sbjct: 12 GGGDGETTVVLAHGYGGSSHIWDDVAP 38
>11_06_0051 -
19645726-19646007,19646045-19646513,19647749-19647771,
19647978-19648328
Length = 374
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 486 EELDQHQRQAQLSPNKRRNARSVNR--QEHKH*ALNDSSSLERRRTTLEYLHRSI 644
+ LDQ + +L KRR +NR ++ + S+ RRR +E L SI
Sbjct: 188 DALDQIMEKLELMEAKRRQNEKINRILEKFNEMEKRERESMHRRRDIMEELSTSI 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,050,936
Number of Sequences: 37544
Number of extensions: 309716
Number of successful extensions: 711
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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