Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14e16
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   0.76 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   4.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.4  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   9.4  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +2

Query: 86  NIVKYKNKFQK*PLNFNFITEKLSHKFTEQLDTFI 190
           N +KY       P NF FIT+  S    EQ    I
Sbjct: 306 NTLKYYEVGSNVPFNFKFITDANSSSTPEQFKVII 340


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 683 SEDLMGPQQFLSWNAT 636
           SED++ P  +L WN T
Sbjct: 250 SEDVLLPSVYLRWNLT 265


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 477  VRIEELDQHQRQAQLSPNKRRN 542
            +R+++LDQH  +    P  R +
Sbjct: 983  IRVDDLDQHTLKVTWKPPPRED 1004


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 313 LKYHRYLKQSHNYKK 357
           L+Y  Y+K SH ++K
Sbjct: 62  LEYELYIKYSHTHEK 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,273
Number of Sequences: 438
Number of extensions: 4345
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)