Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14e15
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016414-5|AAG24020.1|  585|Caenorhabditis elegans Hypothetical ...    35   0.071
Z72502-9|CAE17688.1|  300|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AF016424-6|AAB65333.1|  366|Caenorhabditis elegans Transforming ...    28   6.2  

>AF016414-5|AAG24020.1|  585|Caenorhabditis elegans Hypothetical
           protein D1065.1 protein.
          Length = 585

 Score = 34.7 bits (76), Expect = 0.071
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = -1

Query: 421 YTSIILLMFFLSQKNGQYITKYTL 350
           Y + ILL FF +Q+NG Y+TKYTL
Sbjct: 165 YITEILLCFFDTQRNGIYVTKYTL 188


>Z72502-9|CAE17688.1|  300|Caenorhabditis elegans Hypothetical
           protein C08B6.12 protein.
          Length = 300

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 428 LFLHIHHTFNVLLITKKRTIHNKVYTF 348
           +F +I +   ++++ KKR IH++VY F
Sbjct: 14  IFAYIFNAILLVMLEKKRVIHSRVYMF 40


>AF016424-6|AAB65333.1|  366|Caenorhabditis elegans Transforming
           growth factor betafamily protein 2 protein.
          Length = 366

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 610 LFKI-LCPNGKSLKNNKFYTTFLKRLCFILQLY 705
           LF I + PNG ++K N + +T++KRL   L+ Y
Sbjct: 51  LFNIDINPNGPAVKANNYVSTYMKRLYKQLENY 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,116,195
Number of Sequences: 27780
Number of extensions: 334959
Number of successful extensions: 739
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)