Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14e15
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   5.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   7.1  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   7.1  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   7.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.3  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -1

Query: 367 ITKYTLF*NILNLVEIFSFTCCCNCNFQNIR 275
           I KY LF  I+N V I       N NF+  R
Sbjct: 296 IAKYLLFTFIMNTVSILVTVIIINWNFRGPR 326


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = -2

Query: 471 SLMFCKIKLIQHPVTVLTHPSYF*CSSYHKK 379
           +++ C+++   +P+ +   P Y    SYHK+
Sbjct: 112 AIIACQMEFQLYPMDIQICPIYIESFSYHKQ 142


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 290 FSKYKRLAKLQHYLIGVFMDCKKYFLFV 207
           F+K K+ AK    ++GVF+ C   F  V
Sbjct: 327 FAKEKKAAKTLGIVMGVFIICWLPFFVV 354


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 341 YIKSRRDIQLYVLLQL*FSKYKRLAKLQ 258
           Y  S RD   Y+L Q   S + R  KLQ
Sbjct: 411 YSTSMRDPAFYMLYQKILSYFLRYKKLQ 438


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 371 IHNKVYTFLKYIKSRRD-IQLYVLLQL*FSKYKRLAKLQHY 252
           +HN +    K IKS  + I  Y++     S+ K  +KL+ Y
Sbjct: 55  VHNHIQNIFKIIKSTNEKITRYIIRMFLISQQK-TSKLKIY 94


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 371 IHNKVYTFLKYIKSRRD-IQLYVLLQL*FSKYKRLAKLQHY 252
           +HN +    K IKS  + I  Y++     S+ K  +KL+ Y
Sbjct: 38  VHNHIQNIFKIIKSTNEKITRYIIRMFLISQQK-TSKLKIY 77


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 341 YIKSRRDIQLYVLLQL*FSKYKRLAKLQ 258
           Y  S RD   Y+L Q   S + R  KLQ
Sbjct: 411 YSTSMRDPAFYMLYQNILSYFLRYKKLQ 438


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,496
Number of Sequences: 438
Number of extensions: 4279
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)