Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14e14
         (391 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644...    27   7.0  
10_07_0123 + 13082680-13082982,13083730-13084659                       26   9.2  
09_02_0495 + 9880714-9881196                                           26   9.2  
05_03_0289 - 11688733-11691342                                         26   9.2  
02_01_0366 - 2631738-2632109                                           26   9.2  

>01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,
            6448164-6448243,6449045-6449129,6449221-6449312,
            6449388-6449456,6449544-6449580,6449662-6449744,
            6450427-6450873,6450978-6451014,6451101-6451158,
            6451243-6451382,6451610-6451675,6451794-6451908,
            6453261-6453299,6453482-6453543
          Length = 1927

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = -3

Query: 329  VGLRAATTSMMVSRNLAAAQKATDPIQQLFLDKIREYKQ--KSAGGKVP-DASPA 174
            VG + ATTS + S NL   QKA   +       + E  +  K    KVP D S A
Sbjct: 1334 VGFQTATTSNLYSSNLCQNQKANSEVLHGVSSNLIENSKDDKKTSPKVPVDGSKA 1388


>10_07_0123 + 13082680-13082982,13083730-13084659
          Length = 410

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -3

Query: 332 LVGLRAATTSMMVSRNLAAAQKATDPIQQLFLDKIREYKQKSAGGKVPDAS 180
           L GL    TSM    N+A+  +A+ P  +L  D   EY+        P  S
Sbjct: 185 LPGLAGEMTSMADQANMASTSQASAPSSELPQDWYDEYEVAYGAAAPPSPS 235


>09_02_0495 + 9880714-9881196
          Length = 160

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +1

Query: 91  GNAVMSIPGPPPYCXXXXXXXXXXXXXTAGLASGTLPP 204
           G AV S P PPP                 GL  GT PP
Sbjct: 44  GGAVNSYPPPPPAGSSSSSSSGGGDGGAGGLFGGTYPP 81


>05_03_0289 - 11688733-11691342
          Length = 869

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 128 YGGGPGIDMTAFPSLKFEEPKLDPIDEQAAP 36
           YG   G+   A  +++ + PK DP  E AAP
Sbjct: 251 YGAAVGVTYQANDTVQIKYPKNDPDAEYAAP 281


>02_01_0366 - 2631738-2632109
          Length = 123

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 384 SWRNSLIDRN*KYARIKTGWFEGG 313
           SWR    DR  +   +K GW EGG
Sbjct: 36  SWRARRGDRRWRRLELKAGWREGG 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,797,314
Number of Sequences: 37544
Number of extensions: 239574
Number of successful extensions: 535
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)