Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14e13
(352 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 29 0.28
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 27 0.64
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 27 1.1
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 27 1.1
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 26 2.0
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 25 2.6
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 25 3.4
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 25 3.4
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 25 4.5
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su... 24 6.0
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 24 6.0
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 24 6.0
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 24 6.0
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 24 6.0
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 24 7.9
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 28.7 bits (61), Expect = 0.28
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 76 FLNRFSIMLVFWWEDLSFCICYPFFKIF 159
FL RFS+ W +L + Y FF IF
Sbjct: 1476 FLERFSMRYTHRWRNLGIFVGYVFFNIF 1503
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 27.5 bits (58), Expect = 0.64
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -2
Query: 147 EWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQM 46
+++ + ++FP Q D E I +L DMR++ +
Sbjct: 729 KYIHFAREKVFPRLQQMDEEKISRLYSDMRRESL 762
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 26.6 bits (56), Expect = 1.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 102 QHDREAIQKLIQDMRKKQMQSLESK*TQVYK 10
Q E + +IQDM KKQ +S TQ ++
Sbjct: 960 QRTNEVLLPVIQDMHKKQFVGTQSNLTQFFE 990
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 1.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 212 WLCTHHFLLDCSFFSTNQNILKNG*QIQKDKSSHQKTNMIEKRF 81
WLCT L C+ S +I+ + KSS KTN++ F
Sbjct: 348 WLCTFFHALQCAIIS---SIVSQWFFYRDTKSSATKTNLVSHFF 388
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 2.0
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +1
Query: 4 ILFINLGSLGFQTLHLFLPHILY*FLNRFSIMLVF 108
+L + G G +T ++ H+L+ LNR ++ L++
Sbjct: 537 LLILCKGFEGLETFFAYIVHLLHGVLNRNNVKLIY 571
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 25.4 bits (53), Expect = 2.6
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Frame = -2
Query: 333 DVINCDKIFIREKSKYNNLSSENLKINF*TMGNWKLEVGRMAMY---TSFPVGLFFF-FN 166
DV+N D ++ + S+ + L + L +NF WK +G+ A FP L F
Sbjct: 266 DVLNRDAMYSKI-SRISRLPNY-LTVNF-VRFYWKASIGKKAKILRKVKFPFELDAVEFC 322
Query: 165 QPKYFEEW--VTNTKRQIFPPENQHDREAIQKLIQDMRKKQMQSLESK*TQV 16
P+ ++ V + R+I + +H+R A + IQ ++ E + TQV
Sbjct: 323 TPELSQKLIPVRDKLREIEKNDEEHERAAKRIKIQPSEDEKEAEAECRLTQV 374
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 25.0 bits (52), Expect = 3.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 33 IPDFAFVSSSYPVLIFESLLYHVG 104
IP+ +S +YP LIFE+L +G
Sbjct: 174 IPNTGTMSEAYPHLIFENLTSKLG 197
>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 25.0 bits (52), Expect = 3.4
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 50 CFFLISCINF*IASLSCWFSGGKICLFVFVTHSSKYF 160
CF+L+ I IA L + G + LF+F YF
Sbjct: 210 CFYLVQYIVAYIAMLLAMYYNGYVILFLFCGTFFGYF 246
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 24.6 bits (51), Expect = 4.5
Identities = 6/27 (22%), Positives = 15/27 (55%)
Frame = +1
Query: 88 FSIMLVFWWEDLSFCICYPFFKIFWLV 168
+++ + WW + +C F +FW++
Sbjct: 76 YALRVPNWWPCKTTVVCLILFLLFWII 102
>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 24.2 bits (50), Expect = 6.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 176 KNNPTGNDVYIAILPTSSFQLP 241
K NP+ NDV A L SF+ P
Sbjct: 54 KFNPSENDVLCASLKIKSFETP 75
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 24.2 bits (50), Expect = 6.0
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -2
Query: 204 YTSFPVGLFFFFNQPKYFEEWVTNTKRQIFPP 109
YT FPV + + NQP E T QI P
Sbjct: 422 YTLFPVPVDVYDNQPNNPESLAQTTLLQISTP 453
>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 24.2 bits (50), Expect = 6.0
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -3
Query: 206 CTHHFLLDCSFFSTNQ 159
C +HF LDC F+ Q
Sbjct: 394 CKNHFCLDCDVFAHEQ 409
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 24.2 bits (50), Expect = 6.0
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 48 FVSSSYPVLIFESLLYHVGFLVGRFVFL 131
F+ SSY I +SLL GFL VFL
Sbjct: 526 FLDSSYYKPILDSLLGVFGFLADSKVFL 553
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 24.2 bits (50), Expect = 6.0
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -1
Query: 202 HIISCWIVLFFQP 164
H++SC+ LFF+P
Sbjct: 594 HVLSCYKTLFFEP 606
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 23.8 bits (49), Expect = 7.9
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -2
Query: 321 CDKIFIREKSKYNNLSSENLKINF*TMGNWKLEVGRM 211
CD++ K K +++SSE+L++ + NW + V +
Sbjct: 455 CDEVATLLKEKNSSVSSESLEV----LSNWIVSVDNL 487
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,677,066
Number of Sequences: 5004
Number of extensions: 36619
Number of successful extensions: 129
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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