Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14e13
(352 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132949-12|CAB70105.1| 90|Caenorhabditis elegans Hypothetical... 50 4e-07
Z93383-6|CAB07623.1| 283|Caenorhabditis elegans Hypothetical pr... 30 0.54
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p... 30 0.54
Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z74038-2|CAE48502.1| 611|Caenorhabditis elegans Hypothetical pr... 28 1.6
Z81137-3|CAB03471.1| 338|Caenorhabditis elegans Hypothetical pr... 28 2.2
AF016435-4|AAB65880.2| 330|Caenorhabditis elegans Serpentine re... 28 2.2
Z50872-2|CAA90755.1| 273|Caenorhabditis elegans Hypothetical pr... 27 2.9
AF000262-9|AAN60529.1| 820|Caenorhabditis elegans Hypothetical ... 27 2.9
AF026215-7|ABR92608.1| 554|Caenorhabditis elegans Hypothetical ... 27 3.8
AF026215-6|AAB71325.1| 516|Caenorhabditis elegans Hypothetical ... 27 3.8
Z78061-1|CAB01494.1| 658|Caenorhabditis elegans Hypothetical pr... 27 5.0
U64857-12|AAN84849.1| 413|Caenorhabditis elegans Hypothetical p... 26 6.6
U12965-9|AAA20605.3| 522|Caenorhabditis elegans Hypothetical pr... 26 6.6
AC024877-9|AAF60900.2| 214|Caenorhabditis elegans Hypothetical ... 26 6.6
Z82287-4|CAB05314.1| 433|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z81122-11|CAB61031.1| 447|Caenorhabditis elegans Hypothetical p... 26 8.7
Z80344-2|CAB02487.3| 608|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z79756-6|CAB02117.3| 693|Caenorhabditis elegans Hypothetical pr... 26 8.7
Y08816-1|CAA70050.2| 433|Caenorhabditis elegans TFIIE-alpha pro... 26 8.7
U80838-7|AAC71112.3| 581|Caenorhabditis elegans Hypothetical pr... 26 8.7
U50309-2|AAG24136.2| 334|Caenorhabditis elegans Seven tm recept... 26 8.7
AF114440-1|AAD13294.1| 447|Caenorhabditis elegans delta5-fatty ... 26 8.7
AF078796-1|AAC95143.1| 447|Caenorhabditis elegans delta 5 fatty... 26 8.7
>AL132949-12|CAB70105.1| 90|Caenorhabditis elegans Hypothetical
protein Y53F4B.14 protein.
Length = 90
Score = 50.4 bits (115), Expect = 4e-07
Identities = 23/68 (33%), Positives = 39/68 (57%)
Frame = -2
Query: 243 MGNWKLEVGRMAMYTSFPVGLFFFFNQPKYFEEWVTNTKRQIFPPENQHDREAIQKLIQD 64
MG WKLE GR + +FPVG F+ FNQP F+E++ + ++ E ++L+
Sbjct: 1 MGGWKLETGRFLLLITFPVGAFWLFNQPTIFKEFMRGYRIPDSSAGDKAMAEFKEQLLAT 60
Query: 63 MRKKQMQS 40
RK++ ++
Sbjct: 61 KRKEEYEN 68
>Z93383-6|CAB07623.1| 283|Caenorhabditis elegans Hypothetical
protein F54B8.6 protein.
Length = 283
Score = 29.9 bits (64), Expect = 0.54
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +3
Query: 33 IPDFAFVSSSYPVLIFESLLYHVGFLV--GRFVFLYLLPILQNI 158
+ + AF+ YP L+F+++ Y +GFL+ RF+ +Y P+ I
Sbjct: 77 VKNLAFILI-YPFLVFDTMRYTLGFLITFDRFIAIY-FPVFYQI 118
>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
protein C52B9.8 protein.
Length = 1336
Score = 29.9 bits (64), Expect = 0.54
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = -2
Query: 159 KYFEEWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQMQSLESK 28
K ++++TN ++I E ++++ IQKLIQ+ + L+ K
Sbjct: 218 KSMQQYITNENKRIAREEMKNEKNRIQKLIQEDEEGYRAMLDEK 261
>Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical
protein H40L08.3 protein.
Length = 1026
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/52 (19%), Positives = 27/52 (51%)
Frame = -2
Query: 171 FNQPKYFEEWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQMQSLESK*TQV 16
FN+ + ++ + + ++ E+ H + + +I+D +K + LE K ++
Sbjct: 747 FNESEAIKQRTISNLKGLYEDESTHQKRKYETMIEDQIRKSFRQLEEKQNEI 798
>Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical
protein H40L08.3 protein.
Length = 1026
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/52 (19%), Positives = 27/52 (51%)
Frame = -2
Query: 171 FNQPKYFEEWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQMQSLESK*TQV 16
FN+ + ++ + + ++ E+ H + + +I+D +K + LE K ++
Sbjct: 747 FNESEAIKQRTISNLKGLYEDESTHQKRKYETMIEDQIRKSFRQLEEKQNEI 798
>Z74038-2|CAE48502.1| 611|Caenorhabditis elegans Hypothetical
protein F58B4.1b protein.
Length = 611
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -2
Query: 192 PVGLFFFFNQPKYFEEWVTNTKRQIFPPENQHDRE 88
P G FF N F W TN + +P N ++ +
Sbjct: 571 PFGSNFFNNNYNSFNNWYTNKNKNYYPYSNSNNNK 605
>Z81137-3|CAB03471.1| 338|Caenorhabditis elegans Hypothetical
protein W02D9.4 protein.
Length = 338
Score = 27.9 bits (59), Expect = 2.2
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 194 NDVYIAILPTSSFQLPIV*KF-IFRFSELRLLYLDFSLINILSQFI 328
N +YI LP S+ + + ++ F+ L LL L IN+LSQ I
Sbjct: 230 NIIYIRFLPDSNSTFFVFSCYSLYLFTNLLLLNLKLLFINVLSQVI 275
>AF016435-4|AAB65880.2| 330|Caenorhabditis elegans Serpentine
receptor, class w protein8 protein.
Length = 330
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 214 DGYVHIISCWIVLFFQPTKIF*RMGNKYKKTNLPTRKPT 98
DGY+ ++ C++ + T IF K ++ NL K T
Sbjct: 222 DGYIAMVVCFLYIIVAGTLIFQLQKAKQRRKNLKAEKST 260
>Z50872-2|CAA90755.1| 273|Caenorhabditis elegans Hypothetical
protein C05D12.4 protein.
Length = 273
Score = 27.5 bits (58), Expect = 2.9
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 213 MAMYTSFPVGLFFFFNQPKYFEEWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQ-MQSL 37
+ M T++ + F F + E WVTN K + +++ E ++K ++ KQ Q L
Sbjct: 196 LKMQTNW-IDTFLFEHSKMISEVWVTNQKMAVQSKQSEDQLEVLKKKKDVLKAKQAAQEL 254
Query: 36 E 34
E
Sbjct: 255 E 255
>AF000262-9|AAN60529.1| 820|Caenorhabditis elegans Hypothetical
protein C48E7.8 protein.
Length = 820
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 188 LDCSFFSTNQNILKNG*QIQKDKSSHQKTNMIEKRFKN 75
+ CSF + + IL+ + DK +H K N ++ FKN
Sbjct: 18 VSCSFTKSGKQILQQ--IFEGDKDNHTKFNKFQELFKN 53
>AF026215-7|ABR92608.1| 554|Caenorhabditis elegans Hypothetical
protein F09G2.8b protein.
Length = 554
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 150 EEWVTNTKRQIFPPENQHDREAIQKLIQDMRK 55
E +++++ P +HD AIQK+++D RK
Sbjct: 365 EYFISSSPGPFNPKGREHDLAAIQKIMKDARK 396
>AF026215-6|AAB71325.1| 516|Caenorhabditis elegans Hypothetical
protein F09G2.8 protein.
Length = 516
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 150 EEWVTNTKRQIFPPENQHDREAIQKLIQDMRK 55
E +++++ P +HD AIQK+++D RK
Sbjct: 327 EYFISSSPGPFNPKGREHDLAAIQKIMKDARK 358
>Z78061-1|CAB01494.1| 658|Caenorhabditis elegans Hypothetical
protein C48G7.1 protein.
Length = 658
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -2
Query: 114 PPENQHDREAIQKLIQDMRKKQMQS 40
PP N D + Q ++++R+K++QS
Sbjct: 454 PPANAGDPQVQQNCVEELRRKRLQS 478
>U64857-12|AAN84849.1| 413|Caenorhabditis elegans Hypothetical
protein C37C3.2c protein.
Length = 413
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 106 FWWEDLSFCICYPFFKIFWLVEKKEQ 183
F W FC+ P F+ L+ KK Q
Sbjct: 379 FTWATYVFCVFLPIFEPIQLISKKPQ 404
>U12965-9|AAA20605.3| 522|Caenorhabditis elegans Hypothetical
protein F23F12.3 protein.
Length = 522
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 79 LNRFSIMLVFWWEDLSFCICYPFFKIFW 162
+NRF I+ F W+ F C F IF+
Sbjct: 6 INRFHILCFFLWQFGLFYACQLIFPIFY 33
>AC024877-9|AAF60900.2| 214|Caenorhabditis elegans Hypothetical
protein Y95B8A.4 protein.
Length = 214
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 194 FLLDCSFFSTNQNILKNG*QIQKDKSSHQKTNMIEKRFK 78
FL +F + +KNG Q Q+ + +KT EK+ K
Sbjct: 176 FLFFFKYFKKFNSTVKNGDQKQESDETDEKTEKTEKQAK 214
>Z82287-4|CAB05314.1| 433|Caenorhabditis elegans Hypothetical
protein ZK550.4 protein.
Length = 433
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 280 IVVFRFFSNKYLIAIYHIHR 339
+VV FFS+++ I +YHI R
Sbjct: 33 MVVKNFFSSEHFIIVYHIMR 52
>Z81122-11|CAB61031.1| 447|Caenorhabditis elegans Hypothetical
protein T13F2.1 protein.
Length = 447
Score = 25.8 bits (54), Expect = 8.7
Identities = 7/26 (26%), Positives = 16/26 (61%)
Frame = +1
Query: 94 IMLVFWWEDLSFCICYPFFKIFWLVE 171
+M +F W+ + + PF ++ WL++
Sbjct: 246 VMTLFRWQHVHWTFMLPFLRLSWLLQ 271
>Z80344-2|CAB02487.3| 608|Caenorhabditis elegans Hypothetical
protein F15D4.4 protein.
Length = 608
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 33 IPDFAFVSSSYPVLIFESLLYHVGFLVGRFVFLYLLPILQNI 158
+ D + SS +P ++ LL+ G++ G F L+ + QNI
Sbjct: 318 LEDTSCDSSFFPPVVPTILLFDDGYISGNFTAAQLITMEQNI 359
>Z79756-6|CAB02117.3| 693|Caenorhabditis elegans Hypothetical
protein F53C11.2 protein.
Length = 693
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = -2
Query: 297 KSKYNNLSS-----ENLKINF*TMGNWKLEVGRMAMYTSFPVGLFFFFNQPKY 154
K YNN+ S ENL I+ + N + + + + FF+N+PKY
Sbjct: 283 KFPYNNVGSSTDFIENLSISRQLVLNSYFSIDTLFVLSGITEAYIFFWNKPKY 335
>Y08816-1|CAA70050.2| 433|Caenorhabditis elegans TFIIE-alpha
protein protein.
Length = 433
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 280 IVVFRFFSNKYLIAIYHIHR 339
+VV FFS+++ I +YHI R
Sbjct: 33 MVVKNFFSSEHFIIVYHIMR 52
>U80838-7|AAC71112.3| 581|Caenorhabditis elegans Hypothetical
protein F47F6.3 protein.
Length = 581
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 43 LHLFLPHILY*FLNRFSIMLVF 108
+HL+LP+IL+ NR+SI +F
Sbjct: 19 VHLWLPYILWENSNRYSIASLF 40
>U50309-2|AAG24136.2| 334|Caenorhabditis elegans Seven tm receptor
protein 146 protein.
Length = 334
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2
Query: 315 KIFIREKSKYNNLSSENLKIN 253
KIF++ KS NN+S +L++N
Sbjct: 220 KIFLKMKSAGNNMSKRSLELN 240
>AF114440-1|AAD13294.1| 447|Caenorhabditis elegans delta5-fatty
acid desaturase protein.
Length = 447
Score = 25.8 bits (54), Expect = 8.7
Identities = 7/26 (26%), Positives = 16/26 (61%)
Frame = +1
Query: 94 IMLVFWWEDLSFCICYPFFKIFWLVE 171
+M +F W+ + + PF ++ WL++
Sbjct: 246 VMTLFRWQHVHWTFMLPFLRLSWLLQ 271
>AF078796-1|AAC95143.1| 447|Caenorhabditis elegans delta 5 fatty
acid desaturase protein.
Length = 447
Score = 25.8 bits (54), Expect = 8.7
Identities = 7/26 (26%), Positives = 16/26 (61%)
Frame = +1
Query: 94 IMLVFWWEDLSFCICYPFFKIFWLVE 171
+M +F W+ + + PF ++ WL++
Sbjct: 246 VMTLFRWQHVHWTFMLPFLRLSWLLQ 271
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,966,028
Number of Sequences: 27780
Number of extensions: 194479
Number of successful extensions: 548
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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