Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14e08
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0593 - 18825741-18826702,18826994-18827875,18828687-188287...    29   3.2  
03_05_0543 - 25404630-25405408,25405461-25405605                       28   7.4  
08_01_0055 - 375343-375567,375672-377540                               28   9.8  
02_02_0028 + 6196453-6196512,6196936-6197320,6197843-6197925,619...    28   9.8  
01_06_0928 + 33085403-33089224                                         28   9.8  

>09_04_0593 -
           18825741-18826702,18826994-18827875,18828687-18828775,
           18828942-18829080,18829405-18829531,18829629-18829838
          Length = 802

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +2

Query: 539 SSVSFGKHKAPPAKAPRLVKNKRPGIPRFEAKRYPLK 649
           SS S    KAPP K   L K + P    F    Y LK
Sbjct: 765 SSSSKEPEKAPPVKVDELAKKEEPKFQAFSGTSYSLK 801


>03_05_0543 - 25404630-25405408,25405461-25405605
          Length = 307

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +2

Query: 569 PPAKAPRLVKNKR-PGI--PRFEAKRYPLKAPIPTTPCLSSKF 688
           PP   PR       PG+  P    +R P  AP P TP LS +F
Sbjct: 133 PPQPEPRRPPAAPLPGVRTPPSPPRRAPAPAPAPLTPALSQRF 175


>08_01_0055 - 375343-375567,375672-377540
          Length = 697

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +3

Query: 381 SILYTYSTF*APWEQVDRLHKVICRVSLNCDCISNCKLLEQLCRNG 518
           S+++ Y +   P E +  + K +CR  +  D ++   L++ LC+NG
Sbjct: 282 SLVHGYCSSGKPKEAIG-IFKKMCRHGVEPDVVTYTALMDYLCKNG 326


>02_02_0028 +
           6196453-6196512,6196936-6197320,6197843-6197925,
           6198060-6198183,6198404-6198523,6198595-6198755,
           6198999-6199157,6199272-6199434,6199604-6199729,
           6199775-6199900,6200400-6200764,6201204-6201404,
           6201685-6201794,6201919-6202003,6202553-6202681,
           6202763-6202868,6202984-6203072,6203172-6203474
          Length = 964

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 338 WLISTELYVAGDIGNHMRKIC-ILSTHQKKSNNNNNFKTYVSHS 210
           WLI+ ELY     GN+ +K   I + +   S++  NF  ++S++
Sbjct: 233 WLINDELYRGYYQGNNKKKTNEIAAAYDFLSSDQGNFNVFISYN 276


>01_06_0928 + 33085403-33089224
          Length = 1273

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +3

Query: 459  SLNCDCISNCKLLEQLCR 512
            SL   CI NCKLLE+ CR
Sbjct: 1216 SLQHICIWNCKLLEESCR 1233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,924,274
Number of Sequences: 37544
Number of extensions: 329076
Number of successful extensions: 888
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)