Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14e08
         (792 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00052-9|AAK21418.1|  201|Caenorhabditis elegans Hypothetical pr...    45   5e-05
Z81047-3|CAB02829.1|  389|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z81143-4|CAB03516.1|  189|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z92828-6|CAB07338.2|  393|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z82077-2|CAB04940.1|  722|Caenorhabditis elegans Hypothetical pr...    28   8.8  
AF040646-6|AAK31540.1|  510|Caenorhabditis elegans Hypothetical ...    28   8.8  
AF040646-5|AAK31539.1|  492|Caenorhabditis elegans Hypothetical ...    28   8.8  

>U00052-9|AAK21418.1|  201|Caenorhabditis elegans Hypothetical
           protein K02F3.10 protein.
          Length = 201

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 20/73 (27%), Positives = 37/73 (50%)
 Frame = -1

Query: 732 RKAKTDFKAYMRDPKNLELRHGVVGIGALSGYLFASKRGIPGRLFFTSLGALAGGALCFP 553
           +KA T   AY+ +      +   + +G ++G++   KRG  GRL  T++G     A C+P
Sbjct: 103 KKAATKCNAYLTEEWTALPKAAAITVGGMAGFVLGLKRGPVGRLLTTTIGLATMAAFCYP 162

Query: 552 KETDEIFRSAMYH 514
            E  ++ ++   H
Sbjct: 163 IEAVDVAKTGRAH 175


>Z81047-3|CAB02829.1|  389|Caenorhabditis elegans Hypothetical
           protein C41G6.5 protein.
          Length = 389

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = -1

Query: 519 YHFGKAALGVYNLICSHNLSLRDRLPCEADQPAPKELKKLNKC 391
           YHFG    G  +      +SL  R  C+ D      LKK   C
Sbjct: 53  YHFGGVVCGACSAFFRRTVSLNIRYLCDGDNQCKSMLKKCRAC 95


>Z81143-4|CAB03516.1|  189|Caenorhabditis elegans Hypothetical
           protein ZK265.6 protein.
          Length = 189

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 783 DFKCELESMKEEICVSM-RKAKTDFKAYMRDPKNL 682
           D K  L   + E+CV M  +   DF+A  RDPKNL
Sbjct: 128 DRKFRLFHRETELCVYMLARHGEDFQAMTRDPKNL 162


>Z92828-6|CAB07338.2|  393|Caenorhabditis elegans Hypothetical
           protein C37A5.7 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 552 KETDEIFRSAMYHFGKAALGV 490
           +E DE+FRS+MYH    + G+
Sbjct: 357 EEKDEVFRSSMYHINNCSNGL 377


>Z82077-2|CAB04940.1|  722|Caenorhabditis elegans Hypothetical
           protein W09C5.5 protein.
          Length = 722

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 608 PGIPRFEAKRYPLKAPIPTTP 670
           PG P  +  R P+  PIPTTP
Sbjct: 151 PGAPGAQPSRPPILPPIPTTP 171


>AF040646-6|AAK31540.1|  510|Caenorhabditis elegans Hypothetical
           protein H17B01.1b protein.
          Length = 510

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = -1

Query: 657 IGALSGYLFASKRGIPGRLFFTSLGALAGGAL 562
           IG LS    A K G  G LF+ +L ALA  AL
Sbjct: 112 IGGLSSGWLADKVGRRGALFYNNLLALAAAAL 143


>AF040646-5|AAK31539.1|  492|Caenorhabditis elegans Hypothetical
           protein H17B01.1a protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = -1

Query: 657 IGALSGYLFASKRGIPGRLFFTSLGALAGGAL 562
           IG LS    A K G  G LF+ +L ALA  AL
Sbjct: 94  IGGLSSGWLADKVGRRGALFYNNLLALAAAAL 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,939,985
Number of Sequences: 27780
Number of extensions: 303555
Number of successful extensions: 843
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)