Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14e04
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom...    28   1.3  
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    27   3.0  
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    26   5.2  
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    25   9.0  
SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|c...    25   9.0  

>SPCC306.06c |||ER membrane protein, BIG1 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +1

Query: 469 MIFLSCFSLRSKFKNCSSMPVFLF 540
           ++F+ CFSL S FK+ S  P+FLF
Sbjct: 6   ILFIVCFSLVSAFKDTS--PIFLF 27


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -3

Query: 92  PARHTSHDSVTLI*CHN-GSHL 30
           PA HT HDS TL   HN G+H+
Sbjct: 157 PAEHTRHDSKTLGLNHNQGAHI 178


>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +3

Query: 84  SCRAGGIAHTADRAVDTVED*SWHGTGSESNLVEKTGSLVSHFA*KLTEANTGAEDRNLH 263
           SC+ GG A TA   +  +   S HG+      V   G+++ +    L + NTG + + L 
Sbjct: 194 SCQVGGCAATAAGGLRLLRYGSLHGSILGMEAVLPDGTILDNLV-TLRKDNTGLDIKQLF 252

Query: 264 I 266
           I
Sbjct: 253 I 253


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 640 KQRKPFNCLEQCLCISLREQCNVIFNY 720
           +++K  +CL   LC + R  C ++ NY
Sbjct: 385 REKKYVHCLNSTLCATERALCCILENY 411


>SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 50

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 640 KQRKPFNCLEQCLCISLREQC 702
           KQ KP +C  +C C   +E C
Sbjct: 10  KQGKPCDCQSKCGCQDCKESC 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,884,790
Number of Sequences: 5004
Number of extensions: 54934
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)